Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21150 623 / 0 HAP6 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024912 [exp] 498 / 2e-173 AT4G21150 360 / 2e-120 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10024911 [exp] 487 / 6e-168 AT4G21150 474 / 4e-163 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10003546 [exp] 376 / 4e-123 AT4G21150 454 / 6e-154 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10003545 [exp] 260 / 2e-82 AT4G21150 233 / 1e-72 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Lus10033906 [exp] 75 / 3e-16 AT4G21150 57 / 1e-10 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G036600 [exp] 738 / 0 AT4G21150 806 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3) Potri.005G226100 [exp] 714 / 0 AT4G21150 743 / 0.0 HAPLESS 6, ribophorin II (RPN2) family protein (.1), ribophorin II (RPN2) family protein (.2), ribophorin II (RPN2) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05817 [flax] [poplar] Ribophorin_II Oligosaccharyltransferase subunit Ribophorin II
Representative CDS sequence Show only first row Show all	>Lus10022911 pacid=23160056 polypeptide=Lus10022911 locus=Lus10022911.g ID=Lus10022911.BGIv1.0 annot-version=v1.0 ATGGCCGGAAGTCTCCCCAGATTTCTAGCTCCGTTCGTCGCGGCGGCTCTGATTGTGTCCTTCACCGCCGCTGCCTCGGTCTTCCAGCCAATCACAGACT CTCACCGATCCGCCGCATTAGAGATCTTCGATCGATCCTTTGGCAGCTTAGAAGAAACGTACGAGGCATTGAGAACATTTGATGTTCTTAAGGTCGATAG AAAGCCCGATGTAGAGACGGCGGCGTGCCAGTCTGTTTCGGAGACACTTGGTTCGTCGTCTTCGAGTTTGAAAGAAACGTTCTACGCCTTGAAGGTCAAT GGAGTTTTGAAGTGCGAGGTCGACGCTAAGATTGTTGAGGGAATCGTTTCCAGACTTGAGTCTGCTGCTAGCAGCGCTAAATCGTTGCTTGAATTCTATC ATTCGATTGGAGGGTTGGTACTTTTAAAGGATCAAGGTTTGAAGGATGATCTTTATCTTCAGGATGCTGAAGGACTGTTCCGTTCGATCAAGGCTTTAAG TCAGAGTGACGGTAGGTGGCGACACAGTTCTAACAATCCCGAGTCAAGTACCTACGCTGCAGGTTTAGCCCTTGAGTCTCTAGCTGGAGCTGTCTCATTA TCATCTTCTGAGATTGACCAGTCCCTGATTGGTACAACAAAAAATGACATACTGAAGCTTTTTGAAAGCATTGAGAAATATGAAGATGGAGCCTTCTATT TTGATGAGAAAGTAATTGATTCTATTGAGGATCAAAATCCTATTACAACTACATGGTCTGTTGTTAGAGGCATTACATCATTTGCAGCTGCGACTTCAGG AAACCTAAATCTTCCAGGAGAGAAAATATTGGGGTTGGCTAAATTTTTCCTTGGGGTTGGGATTCCTGGTGACGCCAAAGATTTTTTTAACCAAGTGGAC TCATTGGCTTGCCTGGACAACAATAGGGTCTCTGTCCCCTTAATCCTATCACTACCGGCCACAGTCATTTCATTGACCAAAGAAGACGCGCTCAAGGTCA AAGTCAATACTGTACTTGGTTCAGATGCTCCTCCTCTAACGGTGAAGCTCGTACGAGCTTCCAGTGCTGGTGCAAAGGGTGCTTCTGCTATTGAAAGTCA GGAGCTCAATTTTGATGCTGAGAAGAAAGCGTATGTCTTGGACATTTTGAGAAAGGGTATTGATGTTGGCAAGTACATCTTTGTTTTCGAGGTTGTGTTT CATGATCCTGAGCACAAGAATGTTTACACTGCTGGAAGTAAAACTGAGGTTCCGGTCTTTGTTACTGGAGTTGTCAAAGTCGGAAATGCGGAGATTGCAG TCCTTGATAGTGATCTTGGGAGCATTGAAACTCAGAAGAAACTGGATTTTACTGGGAAGAATTCTGTATCACTGTCAGCAAATCATCTTCAGAAGCTGAA ACTAAAATTTCAATTGACCACTCCTCTTGGCCATCCTTTCAAGCCCCATCAGGCGATTCTCAAGCTAACTCATGAGAGCAAGGTGGAGCATGTCTTTGTG GTTGGTAACACCGGAAAGCAGTTTGAGATCGTGCTGGATTTTCTCTCACTCCTGGACAAATTTTACTACCTATCTGGTAAGTATGATGTTCAGCTCACTG TTGGAGATGCAGTCATGGAAGAATCCTTCAAAGTAGTTGCCCATCTTGACCTCGATTTACCAGAAGCACCTGAGAAGGCACCCCGCGCCCCTGCTCAGCT TGCTGATCCATACTCGAGATACGGGCCAAAATCTGAGATATCCCATATATTCAGAGCTCCAGAGAAGCTTCCTCCCAAAGAGGTCTCTCTAACTTTCATG GGTCTGACCCTTCTGCCCCTGTTGGCGTTCATCATCGGGCTTCTACAACTGGGAGTAAACCTGAAGAATTTCCCTTCTTCGCCCAAACCCGCCACATTTG CTGCTCTTTTCCACACGGGAATTGGAGCTGTTCTTTTGCTCTATGTGCTCTTCTGGTTGAAGTTGGATCTGTTCACGACGCTGAAAGTGCTGGGGATCTT AGGAGTGTTCCTGCTGTTCGTCGGACACAGCACCCTTTCCCACCTAGCATCGACATCGTCGAAGTTGAAATCTGCGTGA
AA sequence Show only first row Show all	>Lus10022911 pacid=23160056 polypeptide=Lus10022911 locus=Lus10022911.g ID=Lus10022911.BGIv1.0 annot-version=v1.0 MAGSLPRFLAPFVAAALIVSFTAAASVFQPITDSHRSAALEIFDRSFGSLEETYEALRTFDVLKVDRKPDVETAACQSVSETLGSSSSSLKETFYALKVN GVLKCEVDAKIVEGIVSRLESAASSAKSLLEFYHSIGGLVLLKDQGLKDDLYLQDAEGLFRSIKALSQSDGRWRHSSNNPESSTYAAGLALESLAGAVSL SSSEIDQSLIGTTKNDILKLFESIEKYEDGAFYFDEKVIDSIEDQNPITTTWSVVRGITSFAAATSGNLNLPGEKILGLAKFFLGVGIPGDAKDFFNQVD SLACLDNNRVSVPLILSLPATVISLTKEDALKVKVNTVLGSDAPPLTVKLVRASSAGAKGASAIESQELNFDAEKKAYVLDILRKGIDVGKYIFVFEVVF HDPEHKNVYTAGSKTEVPVFVTGVVKVGNAEIAVLDSDLGSIETQKKLDFTGKNSVSLSANHLQKLKLKFQLTTPLGHPFKPHQAILKLTHESKVEHVFV VGNTGKQFEIVLDFLSLLDKFYYLSGKYDVQLTVGDAVMEESFKVVAHLDLDLPEAPEKAPRAPAQLADPYSRYGPKSEISHIFRAPEKLPPKEVSLTFM GLTLLPLLAFIIGLLQLGVNLKNFPSSPKPATFAALFHTGIGAVLLLYVLFWLKLDLFTTLKVLGILGVFLLFVGHSTLSHLASTSSKLKSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	0	1
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	1.0	0.9678
AT4G16180			unknown protein		Lus10037780 [exp]	1.4	0.9593
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	2.6	0.9447
AT3G16480		MPPALPHA	mitochondrial processing pepti...		Lus10012926 [exp]	3.2	0.9475
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	3.5	0.9513
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Lus10032520 [exp]	3.9	0.9579
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	6.0	0.9400
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	6.9	0.9267
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	7.7	0.9330
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	9.5	0.9451

Compare expression of checked genes

Lus10022911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.