Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G33340 401 / 2e-137 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G64830 380 / 2e-129 Eukaryotic aspartyl protease family protein (.1) AT2G35615 325 / 2e-107 Eukaryotic aspartyl protease family protein (.1) AT1G31450 308 / 9e-101 Eukaryotic aspartyl protease family protein (.1) AT2G28010 250 / 5e-79 Eukaryotic aspartyl protease family protein (.1) AT2G28030 242 / 6e-76 Eukaryotic aspartyl protease family protein (.1) AT2G28040 242 / 7e-76 Eukaryotic aspartyl protease family protein (.1) AT2G03200 213 / 4e-64 Eukaryotic aspartyl protease family protein (.1) AT2G28220 215 / 2e-62 Eukaryotic aspartyl protease family protein (.1) AT1G01300 184 / 1e-52 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024903 [exp] 748 / 0 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 712 / 0 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 557 / 0 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 556 / 0 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 555 / 0 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 506 / 4e-179 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 496 / 2e-174 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002611 [exp] 474 / 2e-165 AT5G33340 392 / 9e-134 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 461 / 1e-160 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 434 / 3e-150 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 402 / 1e-137 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 315 / 1e-103 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 235 / 9e-73 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 233 / 1e-71 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 190 / 5e-55 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 182 / 6e-52 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 179 / 1e-50 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 176 / 2e-49 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 155 / 8e-42 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10022912 pacid=23159952 polypeptide=Lus10022912 locus=Lus10022912.g ID=Lus10022912.BGIv1.0 annot-version=v1.0 ATGTTATTCTATAAAACGAAGTACCATCATACTCCCCCATTGTCCGAGCCTCAGAGCGGAGGATTTAGTGTGGATTTGATCCACCGCGACTCCTCTGCAG GTTCTCCATTCTACAATGCAAAGGAAACCCCATCTCAACGTATTGAGAACGCTTTGAAGCGGTCCATTGCTCGAGGACGTCGCTTCAGCTATGTTCTACG TACTAATCATTCGTCAGGTTATGAGTCTATTATCTCACTTTCTGATCCCGAAGCAGGAATAACGGCCAACAATGGGGAGTATCTCATGAACATCTCCCTA GGCACGCCCCCGTTCTCAATTGTTGCGATAGCTGATACTGGGAGCGACATCATATGGACGCAGTGCAAGCCGTGTACCGGCTGTTACAAGCAGGACGCTC CGTTGTTTGATCCTAAATCATCTAGTACTTACAAAACTGTCTCGTGTTCTTCCGACTCTTGTAATTCGCTTCAAAGTGAAGGGAGCTACTGCTCTTCAAA TGGTGACGTCTGTCAATACCAGGTCAGTTACGGGGACCAATCGCACACGAAAGGAGATGTTGCAGCCGAAACGCTCACTCTAGGGTCCACGAGTGGTCGT TCGGTGGCGCTCCCTAAGACAGTGATTGGTTGCGGGCACGACAATGCTGGAACATTTAGCCCGAAGGGGTCAGGCATCGTTGGTCTCGGAGGGGGTCCGG CTTCACTCGTTACCCAACTTGGTTCATCCATAGCCGGAAAATTCTCTTACTGCCTAGTTCCATACACTGCAGCTAAACTAACGAGTACAATGCACTTTGG TAAAAATGCTATCGTTTCAGGAAACGATGTGGTTTCCACTCCACTCATCTCTAGTCCTCTGATGTCGACCTTTTACTTCCTTCAACTCCAAGCTGTTAGC GTCGGAAGCAAAAAAATACCCTTCCAAGGATCCTCTATTGGAAGTTCAGGAAACATCATAATCGATTCCGGTACCACGCTCACCCTTGTGCCTACAGATT TCTTATCCCAGCTGTCTGATGCTGTTGAGAGCCAAGTCACCGGCGGCACCAAGACCAGCGATCCACAAGGATTGCTGAGCCTATGCTACTTGGTGAACTC GAACCTCAAAGTTCCTCCGATCACAGCGCATTTTCAGGGAGCTGATGTGGTGCTGACCTCGACCAATACTTTCATCGAAATGAGTGATACAGTGACGTGT TTTGCTTTCTATGGTAACGACGAGTTAAGCATCTACGGGAACATCGCGCAGCAGAATTTTCTAATTGGCTACGACCTTCAGAAGCAGAGTTTGTCCTTCA AGCCAACGGATTGCACAAAGAACTAA
AA sequence Show only first row Show all	>Lus10022912 pacid=23159952 polypeptide=Lus10022912 locus=Lus10022912.g ID=Lus10022912.BGIv1.0 annot-version=v1.0 MLFYKTKYHHTPPLSEPQSGGFSVDLIHRDSSAGSPFYNAKETPSQRIENALKRSIARGRRFSYVLRTNHSSGYESIISLSDPEAGITANNGEYLMNISL GTPPFSIVAIADTGSDIIWTQCKPCTGCYKQDAPLFDPKSSSTYKTVSCSSDSCNSLQSEGSYCSSNGDVCQYQVSYGDQSHTKGDVAAETLTLGSTSGR SVALPKTVIGCGHDNAGTFSPKGSGIVGLGGGPASLVTQLGSSIAGKFSYCLVPYTAAKLTSTMHFGKNAIVSGNDVVSTPLISSPLMSTFYFLQLQAVS VGSKKIPFQGSSIGSSGNIIIDSGTTLTLVPTDFLSQLSDAVESQVTGGTKTSDPQGLLSLCYLVNSNLKVPPITAHFQGADVVLTSTNTFIEMSDTVTC FAFYGNDELSIYGNIAQQNFLIGYDLQKQSLSFKPTDCTKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10022912 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10023564 [exp]	1.0	0.9755
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10035218 [exp]	2.4	0.7452
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10023325 [exp]	4.7	0.8973
AT1G13560		AAPT1, ATAAPT1	aminoalcoholphosphotransferase...		Lus10002042 [exp]	8.0	0.6825
AT5G09360		LAC14	laccase 14 (.1)		Lus10036070 [exp]	10.0	0.7234
AT4G02050		STP7	sugar transporter protein 7 (....		Lus10008372 [exp]	11.2	0.7234
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10008919 [exp]	12.2	0.7234
AT2G26490			Transducin/WD40 repeat-like su...		Lus10016289 [exp]	13.2	0.7234
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10017997 [exp]	14.1	0.7234
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10021456 [exp]	15.0	0.7192

Compare expression of checked genes

Lus10022912 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.