Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24900 295 / 4e-96 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024906 [exp] 213 / 2e-67 AT4G24900 119 / 6e-32 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G098000 [exp] 356 / 1e-119 AT4G24900 318 / 4e-105 unknown protein Potri.015G096700 [exp] 116 / 4e-29 AT4G24900 111 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022913 pacid=23159936 polypeptide=Lus10022913 locus=Lus10022913.g ID=Lus10022913.BGIv1.0 annot-version=v1.0 ATGAACCATCCGGAGAAGAAGACGAAGAAGAAGAAGGCCGGCGAGTTCGAATTCTGCAAAGTCTGCAAACTGAATCACGATCACGGAAACCGCCACAAGT ACTTCCCCAACCACACCAAGTCGCTCGCCGCTTTCCTCTCTCGGTTCCAGACCAAGCTCTCCGATATTCGCTTCTTTCTCAAAAACCCGTGCCTTCTTCA GCCCCAGCTCGCCTCTCGCAATCGCTTCTGGTGCGTATTCTGCGATGCTGATGTCGACGAGATTGGAAGCTCCTTCGCTTGCGCTAATGCAATTTATCAC CTGGAAAGTGCTGATCATACCAAGAAATTGAAGAATTTCATATGGAAATATGGCGGGGGAATGGATCGCGTTGACGACTTTCGTTTTTCAGAAGCTGATT TAGCTAAGTGGGAGAAGAACTGCGAGTCACTCAAGGATGGTGGAGCTTCATCGAGTAGGGTTGGACTTCAAATTGGACCTTCAAATGATATCCAGAATGG GCTCAGCTATAAGAGCATTATTAATGACTTTGAGAACAATGTTTTTCACCCTCTTACTTCTAATCTTGACATTGATCATGTTATGCCTTTACAATACAAT ACGCCTCAGTATCAGATATCCCATGTTAGCCGAGTTGTATGTGATGCTAACAGCTCTCTGCCTGGAAACTCGAGCGATCTAACAGGTTGGCAAAATAGCT ACCATTATACCCCCCACAACGGCACAAACAATCTTGGAAACGGAGGGGTTCATCAAGGTAAACACATTGCCGAAGGAGAGAGTCACTTGCAGGGTAAGAA TTGTGATTCCATTGATCTTTCCTCAAGTGTGGCTAAAAAAAATCGAATATCTATCACGACTCCTGAACTGGCTGGAGGAAATGTGCACACAGGAGCACAT CCTCCTTGGTTGGAGGTGTCGGAGGGAAATGGTATAGGCACGACCTCACTCGCTCCGTCTAGTAAGAAAAATAAATCAAAGTTGAATCCGAAAAGAGTGG GTGCTGAATGGGCAGAAAGGAGAAAGCTTGAACTGGAGATGGAGAAGAGAGGAGACATCGTCGAAAGCGAGTGTGCTGCTAACTGGTTACCCAACTTCGG TAGAGTTTGGCAGTCTGGCAGCCGGAAAGAATCTCGTAGAGAATTTGAAAACGAAAAGCAGGATCTCCCTAAATGCGAAAGCCTTTCAGAGACAGCCGTT ACTCTACAGCCTTACATTCGCAAACGACAGGTGAGAAAGTTTGTCTTCGGCAATTATCCAATTCTATGTAGCTTTCATCCAATGGCTGGCAAGGAATTGC AGTGA
AA sequence Show only first row Show all	>Lus10022913 pacid=23159936 polypeptide=Lus10022913 locus=Lus10022913.g ID=Lus10022913.BGIv1.0 annot-version=v1.0 MNHPEKKTKKKKAGEFEFCKVCKLNHDHGNRHKYFPNHTKSLAAFLSRFQTKLSDIRFFLKNPCLLQPQLASRNRFWCVFCDADVDEIGSSFACANAIYH LESADHTKKLKNFIWKYGGGMDRVDDFRFSEADLAKWEKNCESLKDGGASSSRVGLQIGPSNDIQNGLSYKSIINDFENNVFHPLTSNLDIDHVMPLQYN TPQYQISHVSRVVCDANSSLPGNSSDLTGWQNSYHYTPHNGTNNLGNGGVHQGKHIAEGESHLQGKNCDSIDLSSSVAKKNRISITTPELAGGNVHTGAH PPWLEVSEGNGIGTTSLAPSSKKNKSKLNPKRVGAEWAERRKLELEMEKRGDIVESECAANWLPNFGRVWQSGSRKESRREFENEKQDLPKCESLSETAV TLQPYIRKRQVRKFVFGNYPILCSFHPMAGKELQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24900			unknown protein		Lus10022913 [exp]	0	1
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10032737 [exp]	1.7	0.8413
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10039455 [exp]	4.0	0.7998
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10021351 [exp]	5.7	0.8098
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10031572 [exp]	6.6	0.7704
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10015090 [exp]	11.7	0.8014
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	11.7	0.7979
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Lus10003676 [exp]	17.3	0.7542
AT1G73875			DNAse I-like superfamily prote...		Lus10032490 [exp]	19.4	0.7745
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Lus10035640 [exp]	19.4	0.7716
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10041666 [exp]	20.2	0.7704

Compare expression of checked genes

Lus10022913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.