Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20495 259 / 3e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024909 [exp] 199 / 9e-64 AT2G20495 184 / 3e-58 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225900 [exp] 288 / 1e-97 AT2G20495 362 / 7e-127 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10494 [flax] [poplar] Stk19 Serine-threonine protein kinase 19
Representative CDS sequence Show only first row Show all	>Lus10022916 pacid=23160025 polypeptide=Lus10022916 locus=Lus10022916.g ID=Lus10022916.BGIv1.0 annot-version=v1.0 ATGGAGAACGACTCAGAGTCGCCCGGACGTAGAAAGCGCCGGCGTCAAGACTCAAATGAAGAAGAAGAAGAAGAAGAAGAAGAGACGACCGATACTGAGA CTGCTGGCACCGTCGATGAAGCTCCGTCGCTCGAAGACAGCCTTATGTTTAGTGATACGTCGGTGGCGCTTCGTATCATGCGAGCTCAATTCCTTCGCAT TGACAAGGTATCGACCGAGCCTTTCGTTTTGCGCTCGCAGTTGTACAGCAGCGTAGATGATAGAACACAAGTAGATAGAGAATTGGAGACTTTGAAGAGA GAAAACGTATTAAGAGTTTTCAAGCTAAACACTGGGCAAGATGATCACGCTGTTATGTTCTTGGAAGACTACCTAAAACAGATAGAACGTGTTACGAAAA GGCTAGAAGGAACAAGGAATGGTGATACTGAAGTTTTTGAGTGGTTTAGAAAACATGTTATTGATTGCAAGTTGGAACCTAGTATTGGCCATCAAGAGCT TGTGAGTACTTTGAGTGTGCTTAGCATGACCAAGGTCTTGACTGTTCCGATCCTTTCCATGCAGTGGTCACTCCTGTCTAATGGTGGAAAGGTCAAGGAT GCACATATTTCACTTCTAATCAATGCTGGTCTTTTAGGAAGGAAGGAGCTGCTATCTCTTCTAAACCGACGGAGATACAAGGAAATGATGTTAGCCCTCT TGGAGAAGAAGCGTCTTCGAATGTCTCTACTCGATATTAGATTTCACCTGCGAGACCTGATTGGCTCAGGTCACCTCAAGACTGTTAGCACGCCAAGTGG CTTGGTAGTGCGGGTTTCAAAAGATTAA
AA sequence Show only first row Show all	>Lus10022916 pacid=23160025 polypeptide=Lus10022916 locus=Lus10022916.g ID=Lus10022916.BGIv1.0 annot-version=v1.0 MENDSESPGRRKRRRQDSNEEEEEEEEETTDTETAGTVDEAPSLEDSLMFSDTSVALRIMRAQFLRIDKVSTEPFVLRSQLYSSVDDRTQVDRELETLKR ENVLRVFKLNTGQDDHAVMFLEDYLKQIERVTKRLEGTRNGDTEVFEWFRKHVIDCKLEPSIGHQELVSTLSVLSMTKVLTVPILSMQWSLLSNGGKVKD AHISLLINAGLLGRKELLSLLNRRRYKEMMLALLEKKRLRMSLLDIRFHLRDLIGSGHLKTVSTPSGLVVRVSKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20495			unknown protein		Lus10022916 [exp]	0	1
AT3G23580		RNR2A	ribonucleotide reductase 2A (....		Lus10004435 [exp]	1.4	0.8328
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Lus10012487 [exp]	3.5	0.8042
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10027257 [exp]	4.9	0.7868
AT5G11600			unknown protein		Lus10001603 [exp]	11.0	0.7792
AT3G58030			RING/U-box superfamily protein...		Lus10016255 [exp]	12.7	0.7882
AT4G04614			unknown protein		Lus10006902 [exp]	14.7	0.7569
AT4G21860		MSRB2	methionine sulfoxide reductase...		Lus10007105 [exp]	16.9	0.7344
AT4G28440			Nucleic acid-binding, OB-fold-...		Lus10013989 [exp]	19.7	0.7704
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	22.2	0.7492
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	25.5	0.7198

Compare expression of checked genes

Lus10022916 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.