Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64830 164 / 4e-47 Eukaryotic aspartyl protease family protein (.1) AT5G33340 159 / 3e-45 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G31450 148 / 5e-41 Eukaryotic aspartyl protease family protein (.1) AT2G35615 139 / 9e-38 Eukaryotic aspartyl protease family protein (.1) AT2G28010 100 / 9e-24 Eukaryotic aspartyl protease family protein (.1) AT3G20015 100 / 1e-23 Eukaryotic aspartyl protease family protein (.1) AT2G03200 97 / 3e-22 Eukaryotic aspartyl protease family protein (.1) AT2G28040 94 / 2e-21 Eukaryotic aspartyl protease family protein (.1) AT2G28220 93 / 8e-21 Eukaryotic aspartyl protease family protein (.1) AT2G28030 91 / 2e-20 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024910 [exp] 365 / 1e-124 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 357 / 1e-121 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 301 / 6e-100 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024905 [exp] 231 / 4e-76 AT5G33340 191 / 2e-59 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041150 [exp] 227 / 1e-71 AT5G33340 399 / 2e-137 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 226 / 8e-71 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 223 / 1e-69 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 222 / 6e-69 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10002613 [exp] 202 / 2e-61 AT5G33340 406 / 4e-139 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G114400 [exp] 169 / 1e-48 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G087900 [exp] 152 / 2e-42 AT5G33340 430 / 8e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 129 / 8e-34 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 103 / 7e-25 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 104 / 9e-25 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 103 / 1e-24 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 100 / 2e-23 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 92 / 1e-20 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 91 / 5e-20 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232400 [exp] 87 / 1e-18 AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10022917 pacid=23160013 polypeptide=Lus10022917 locus=Lus10022917.g ID=Lus10022917.BGIv1.0 annot-version=v1.0 ATGGCCTCCAATGTTAAAGTCACTACATTGGCTCTCCAACATTCACTGCTAGCCACATTTGTCCTTTGCAATATGCTCACTTCCACATTCGTCGCAGCTC AGACCGGAGGATTTAGCCTGGATTTGATCCGCCGCGACTCCTCTGCAGGTTCGCCATTCTACGATGCGAAAGAGACCCCATCTCAACGTATTGAGAACGC TCTGAAACGATCCATTGCTCGAGGACGTCGTTTCAGTTATGTCCTACATACTAATCATTCGACTGGTCATAAGTCTATCTCGCCTTCTGACCCTGAAGCA GGAATAACAGCGAATAATGGGGAATACCTCATGAACATCTCCCTAGGCACGCCCCCGTTCTCAATTGTTGCGATAGCTGATACTGGGAGCGACATCATAT GGACGCAGTGCAAGCCGTGTACCGGCTGTTACAAGCAGGACGCTCCGTTGTTTGATCCTAAATCATCTAGTACTTACAAAACTGTCTCGTGTTCTTCCGA CTCTTGTAATTCGCTTCAAAGTGAAGGGAGCTACTGCTCTTCCAATGGTGACGTCTGTCAATACCAGGTCAGTTACGGGGACCAATCGCACACGAAAGGA GATGTTGCAGCCGAAACGCTCACCCTCGTGCCTACAGATTTCTTATCCCAGCTGTCAGATGCCGTTGAGAGCCAAGTCACCGGCGGCACCAAGACCAACG ATCCACAAGGATTGTTGAGCCTATGCTACATGGTGAACTCGAACCTCAAAGTTCCTCCAATCACAGCGCATTTTCAGGGAGCTGATGTGATGCTGACCTC GAACAATACTTTCATCGAAATGAGTGATACGGTGACGTGTTTCGCTTTCTATGGTAATGACGAGTTAAGCATTTACGGGAACATCGCGCAGCAGAACTTT CTAATTGGCTACGACCTTCAGAAGCAGAATTTGTCCTTCAAGCCAACGGATTGCACAAAGAACTGA
AA sequence Show only first row Show all	>Lus10022917 pacid=23160013 polypeptide=Lus10022917 locus=Lus10022917.g ID=Lus10022917.BGIv1.0 annot-version=v1.0 MASNVKVTTLALQHSLLATFVLCNMLTSTFVAAQTGGFSLDLIRRDSSAGSPFYDAKETPSQRIENALKRSIARGRRFSYVLHTNHSTGHKSISPSDPEA GITANNGEYLMNISLGTPPFSIVAIADTGSDIIWTQCKPCTGCYKQDAPLFDPKSSSTYKTVSCSSDSCNSLQSEGSYCSSNGDVCQYQVSYGDQSHTKG DVAAETLTLVPTDFLSQLSDAVESQVTGGTKTNDPQGLLSLCYMVNSNLKVPPITAHFQGADVMLTSNNTFIEMSDTVTCFAFYGNDELSIYGNIAQQNF LIGYDLQKQNLSFKPTDCTKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03200			Eukaryotic aspartyl protease f...		Lus10022917 [exp]	0	1
AT5G15430			Plant calmodulin-binding prote...		Lus10003472 [exp]	1.7	0.9931
					Lus10015828 [exp]	2.4	0.9926
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10019536 [exp]	2.6	0.9781
AT1G31930		XLG3	extra-large GTP-binding protei...		Lus10008608 [exp]	3.5	0.9698
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	4.2	0.9867
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	5.3	0.9841
AT5G15430			Plant calmodulin-binding prote...		Lus10000141 [exp]	6.3	0.9822
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10035029 [exp]	6.4	0.9316
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10002933 [exp]	6.7	0.9773
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	7.7	0.9767

Compare expression of checked genes

Lus10022917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.