Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31160 244 / 4e-82 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT3G23290 231 / 3e-77 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT1G07090 224 / 1e-74 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G28490 212 / 7e-70 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) AT5G58500 208 / 2e-68 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT3G04510 204 / 1e-66 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT2G42610 191 / 1e-61 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT1G78815 175 / 3e-55 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT4G18610 161 / 8e-50 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G16910 160 / 1e-49 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024901 [exp] 291 / 1e-100 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 233 / 2e-77 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10023383 [exp] 221 / 2e-73 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10022023 [exp] 207 / 4e-68 AT1G07090 226 / 3e-76 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10042565 [exp] 204 / 8e-67 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10029838 [exp] 189 / 6e-61 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10029219 [exp] 189 / 1e-60 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 186 / 1e-59 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10020700 [exp] 186 / 3e-59 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225600 [exp] 255 / 9e-87 AT2G31160 232 / 6e-78 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.002G037500 [exp] 251 / 5e-85 AT2G31160 230 / 3e-77 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.010G070700 [exp] 246 / 4e-83 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.008G167700 [exp] 244 / 3e-82 AT3G23290 213 / 9e-71 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.001G460400 [exp] 229 / 1e-75 AT2G31160 205 / 1e-66 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.011G156600 [exp] 226 / 1e-74 AT3G23290 205 / 7e-67 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.009G076100 [exp] 220 / 1e-72 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.019G018600 [exp] 214 / 1e-70 AT5G28490 202 / 1e-66 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.009G157600 [exp] 209 / 6e-69 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 211 / 8e-69 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [flax] [poplar] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Lus10022918 pacid=23159928 polypeptide=Lus10022918 locus=Lus10022918.g ID=Lus10022918.BGIv1.0 annot-version=v1.0 ATGGAGTCTCATCACCACCACCACCACCACCTCCACCACCTCCAGCATCACAACCCTTTCAACTTCACCTCCGCCGCCACGTCATCCTCAGCATCCCCAC CTCCACCACCTCCTCCGCCGTCCTCCTCCTCCACCTCCTCAACCGCCACAGTCCAGCTCAGCAGGTACGAGAACCAAAAGAGGAGAGACTGGAACACGTT CGGGCAGTACCTGAAGAACCACCGCCCGCCGCTTTCCTTATCCCGATGCAGCGGGGCCCACGTCCTGGAATTCCTCCGCTACTTGGACCAGTTCGGCAAG ACCAAAGTCCACTCTTTGGTCTGCCCCTTTTACGGCCACCCCACTCCCCCGGCTCCTTGCCCTTGCCCTCTCCGCCAGGCGTGGGGCTCCCTCGACGCCC TCGTAGGCCGGCTCCGGGCCGCGTTCGAGGAGAACGGTGGCAAGCCCGAGGCCAACCCCTTCGGGGCTCGGGCTGTCAGGCTCTACCTCAGGGAGGTCAG AGACCTGCAGTCCAAGGCTCGAGGGATTAGTTACGAGAAGAAGAAGCGCAAGCGCCCTCCTCCTACCTCGCAGGTCAATTCAGCTACAGTGACGCATGCT CAGCCTGAGCCTGTAACGCCGCAGCTTATGGGGCACCAGTTTCATCATCATCATCATCATGTGATGCCTCATCATCCAGGGTCAAGTTAG
AA sequence Show only first row Show all	>Lus10022918 pacid=23159928 polypeptide=Lus10022918 locus=Lus10022918.g ID=Lus10022918.BGIv1.0 annot-version=v1.0 MESHHHHHHHLHHLQHHNPFNFTSAATSSSASPPPPPPPPSSSSTSSTATVQLSRYENQKRRDWNTFGQYLKNHRPPLSLSRCSGAHVLEFLRYLDQFGK TKVHSLVCPFYGHPTPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGKPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPPPTSQVNSATVTHA QPEPVTPQLMGHQFHHHHHHVMPHHPGSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	0	1
AT3G22550			Protein of unknown function (D...		Lus10010568 [exp]	1.4	0.8999
AT1G80870			Protein kinase superfamily pro...		Lus10014361 [exp]	2.0	0.8889
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10018449 [exp]	3.0	0.8616
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	4.9	0.8880
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031830 [exp]	7.1	0.8605
					Lus10016421 [exp]	8.4	0.8560
AT4G02730		AtWDR5b	human WDR5 \(WD40 repeat\) hom...		Lus10014674 [exp]	8.5	0.8622
AT5G18850			unknown protein		Lus10033997 [exp]	8.7	0.8699
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	10.1	0.8687
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	10.5	0.8600

Compare expression of checked genes

Lus10022918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.