Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54790 392 / 4e-125 ARM repeat superfamily protein (.1.2) AT2G23140 382 / 4e-120 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G67340 319 / 9e-98 ARM repeat superfamily protein (.1) AT3G01400 250 / 5e-76 ARM repeat superfamily protein (.1) AT3G46510 241 / 3e-69 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G58680 232 / 4e-69 ARM repeat superfamily protein (.1) AT4G16490 228 / 3e-66 ARM repeat superfamily protein (.1) AT3G54850 230 / 2e-65 ATPUB14 plant U-box 14 (.1) AT1G71020 224 / 8e-65 ARM repeat superfamily protein (.1.2) AT1G23030 227 / 1e-64 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024899 [exp] 1388 / 0 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10019308 [exp] 361 / 1e-109 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10011514 [exp] 360 / 2e-109 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10007738 [exp] 254 / 1e-77 AT3G01400 555 / 0.0 ARM repeat superfamily protein (.1) Lus10011516 [exp] 264 / 2e-77 AT2G23140 410 / 5e-134 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10039047 [exp] 239 / 1e-70 AT4G16490 549 / 0.0 ARM repeat superfamily protein (.1) Lus10016565 [exp] 244 / 3e-70 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 242 / 3e-69 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10043471 [exp] 228 / 8e-65 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225400 [exp] 913 / 0 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.002G037700 [exp] 887 / 0 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.007G051000 [exp] 378 / 9e-119 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.005G144700 [exp] 376 / 8e-118 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G118800 [exp] 262 / 2e-80 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1) Potri.014G016400 [exp] 249 / 2e-75 AT3G01400 557 / 0.0 ARM repeat superfamily protein (.1) Potri.009G029600 [exp] 248 / 9e-72 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 247 / 2e-71 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 229 / 2e-65 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 228 / 8e-65 AT3G54850 806 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10022919 pacid=23160002 polypeptide=Lus10022919 locus=Lus10022919.g ID=Lus10022919.BGIv1.0 annot-version=v1.0 ATGGACGGAACATCTATAAGCTGTCTTGTCAACAGCATTTCTCGATTCATTCTTCTCGTTTCATGCCAGACAAGGATACATGCTACTATTCAAAAGGATT ATAGAAACATGGTTATGGTGCTAAAGTATTTGAAGCCGGTGCTCGATGATGTTGTTGACTACGAGTTAACTTCAGCAGAAATCCTATATCAGGAGTGCGA AGAGCTTGATGCAGCTGTTAATGAGGCCAGAGAGTTTATCGAAACCTGGTCTCCCAAACTGAGCAAGATTCGCAGTGTTCAGAAGAGTGGAGCCCTGGTA ATGGAAATCCAACGATCCTCGCTGGAGATCTGCCATATATTATGTATGCTGTTACAATCTTCTCCAACTGATACCGATACAACTGGTATTCAGTGTGCAA CTAACTTTGAAGCACCGTCTCAGAATTGCATGCAGGAGCTTCAGAGTTTGAAGCAAGAATCACTTACACTGGATATAGAAGACGCCTTAACGAGTCCAAG AGATGATACCGGTCCTTGCAGTGATCATGTGATGAAAGTCATCGGCTCATTTAATTTGACATCGAACCGTGATCTGCTGAAAGAAAGTGTGGCCGTGGAA AAGGAAAGGATGAATACCAATAAAGAGAAAGGGAACATGGATAAGATAAACCAAGTTGTGGATCTCCTCTGTCATATTCGTGCATGTCTGCTTAGAGTTG AGTGCTCCGAACCCGAGAGTGGTGTTCGAATCCCTCCGTACTTCCGCTGCCCCTTGTCTTTGGAGCTTATGTTGGACCCTGTCATTGTGGCTTCTGGTCA AACTTATGAGAGGTCTGCCATCCGGAAATGGCTCGATCATGGCTTGACTGTTTGCCCAAAGACCCGTCAAACACTTTCTCATACAAATCTCATCCCCAAT TACACTGTCAAAGCTATGATAGCAAATTGGTGTCAGGAGAATAACGTAAAGCTTTCTGGAGACTCTGAGCGTGCTAAACTTACACTTTCACCAGCATTAG ATCCTCGTTTATCTCGCTCCGTTAGTGTGAGCTACTCTATGGACAGTAGTAGTAAGTCTTCTCCTAGATCATCCATTGAAGGTCAAGATGGATTTTTGAA GCATGAAGTTAATGAATCAAATGGACATGAAAGTGTGAAGAATGGAAATGCCAAATGCCCTTCTCCGGAACTTTCAGACCATATGATCAGCAGGAGTGCA TCTGCTTCAAGTGCTGTTTCCAGCTCCGAACAAGTGTCAAGAACATCTTCCAAGCATGAGAATGCAAGTGACATCTCGGGAGAGATCACATCTAAAGTTC CTGCTGCTCCTAAGAAGGAATCCATGAAGCAATCTCTAGCTCCTGAAAGAAAACCAGACTTTCCGAGCAATGGAAACTTCTGTAACAGAGTGCATTCTTT ACCAACTGATGCTTCATATGATGATTTAACTACGGCTTCTCATATCGAGGACTTGATTCAGGACTTAAAAAGTCAATCAGACGAACTACAGACCACAGCT GCTGCCGAGTTGCGTTTCCTCACGAAACACAACACAGAGAATCGTGTAATAGTGGCGCAATCTGGTGCTATTGCGCCAGTGCTAACCCTTCTCTACGCAG AAGCTAAGCTAACTCAGGAGCATGCTGTCACCGCTCTCCTGAATCTATCGATCCGTGAAGAGAACAAGAACATGATAGCAGAAGCAGGAGCTATCGAGCC ACTTATTCATGTCCTGAATTCAGGGAGCGACACAGCCAGAGAAAACTCCGCAGCGACTCTCTTTAGCCTGTCTGTCTTGGAAGAGTACAAGGCGAAAATA GGCCGGTCCGGTGCAGTTAAAGCATTGGTGAATCTTCTAAGTTCAGGAACTCTCAGAGGGAAAAAAGATGCCGCCACTGCATTGTTTAACCTCTCAATCT TTCATGAAAACAAAGCTCGCATCGTTCAGGCTGGAGCGGTGAAACATCTGGTGGAGTTGATGGAGCCTGCGACAGGGATGGTTGATAAATCAGTGGCTCT TCTGGCCAACTTGTCTACGGTTGGGGAAGGACGTTTGGCGATTGCCAGGGCCGGAGGCATTCCTCTTCTTGTTGAAGTTGTTGAGTCGGGATCACAAAGG GGAAAGGAAAATGCTGCGTCGGTATTGGTCCAACTGTGCCTTAATAATCCAAAGTACTGTACCCTTGTTCTTCAAGAAGGAGCTGTCCCTCCCCTTGTTG CCCTGTCCCAATCTGGAACACCAAGAGCTAGAGAGAAGCTGTATGATAATAACGATATGGGTTATGCAAGCAGTTCCTTTTCCTCTTCTGATTCTTACAA GAACTGCCGTTTCGATAAAAAAATGCAGGCTCAGCTTCTCTTAGGCCACTTCAGAAATCAGAGAGAAGGAAATGCAGGGAAGGGGAAATCATGA
AA sequence Show only first row Show all	>Lus10022919 pacid=23160002 polypeptide=Lus10022919 locus=Lus10022919.g ID=Lus10022919.BGIv1.0 annot-version=v1.0 MDGTSISCLVNSISRFILLVSCQTRIHATIQKDYRNMVMVLKYLKPVLDDVVDYELTSAEILYQECEELDAAVNEAREFIETWSPKLSKIRSVQKSGALV MEIQRSSLEICHILCMLLQSSPTDTDTTGIQCATNFEAPSQNCMQELQSLKQESLTLDIEDALTSPRDDTGPCSDHVMKVIGSFNLTSNRDLLKESVAVE KERMNTNKEKGNMDKINQVVDLLCHIRACLLRVECSEPESGVRIPPYFRCPLSLELMLDPVIVASGQTYERSAIRKWLDHGLTVCPKTRQTLSHTNLIPN YTVKAMIANWCQENNVKLSGDSERAKLTLSPALDPRLSRSVSVSYSMDSSSKSSPRSSIEGQDGFLKHEVNESNGHESVKNGNAKCPSPELSDHMISRSA SASSAVSSSEQVSRTSSKHENASDISGEITSKVPAAPKKESMKQSLAPERKPDFPSNGNFCNRVHSLPTDASYDDLTTASHIEDLIQDLKSQSDELQTTA AAELRFLTKHNTENRVIVAQSGAIAPVLTLLYAEAKLTQEHAVTALLNLSIREENKNMIAEAGAIEPLIHVLNSGSDTARENSAATLFSLSVLEEYKAKI GRSGAVKALVNLLSSGTLRGKKDAATALFNLSIFHENKARIVQAGAVKHLVELMEPATGMVDKSVALLANLSTVGEGRLAIARAGGIPLLVEVVESGSQR GKENAASVLVQLCLNNPKYCTLVLQEGAVPPLVALSQSGTPRAREKLYDNNDMGYASSSFSSSDSYKNCRFDKKMQAQLLLGHFRNQREGNAGKGKS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10017496 [exp]	1.0	0.9146
AT2G23140			RING/U-box superfamily protein...		Lus10024899 [exp]	2.6	0.8648
AT3G63430			unknown protein		Lus10003090 [exp]	3.7	0.9006
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Lus10025272 [exp]	4.0	0.8777
AT2G40820			unknown protein		Lus10038998 [exp]	4.6	0.8811
AT2G40820			unknown protein		Lus10027293 [exp]	8.5	0.8622
AT3G55060			unknown protein		Lus10030304 [exp]	8.9	0.8670
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10014891 [exp]	9.7	0.8320
AT1G09750			Eukaryotic aspartyl protease f...		Lus10014173 [exp]	11.4	0.8189
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	12.2	0.8528

Compare expression of checked genes

Lus10022919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.