Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31140 258 / 2e-88 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G06200 247 / 7e-84 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G23465 58 / 1e-10 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G29960 56 / 1e-09 AGL64 Peptidase S24/S26A/S26B/S26C family protein (.1) AT1G53530 52 / 2e-08 Peptidase S24/S26A/S26B/S26C family protein (.1.2) AT3G08980 47 / 9e-07 Peptidase S24/S26A/S26B/S26C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024897 [exp] 203 / 1e-67 AT2G31140 186 / 6e-61 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10005571 [exp] 64 / 9e-13 AT1G53530 213 / 1e-71 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10013703 [exp] 59 / 3e-10 AT1G78510 542 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Lus10025393 [exp] 57 / 3e-10 AT1G53530 169 / 3e-54 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Lus10002492 [exp] 45 / 6e-06 AT3G08980 191 / 5e-63 Peptidase S24/S26A/S26B/S26C family protein (.1) Lus10004822 [exp] 44 / 1e-05 AT3G08980 190 / 9e-63 Peptidase S24/S26A/S26B/S26C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G225100 [exp] 305 / 9e-107 AT2G31140 274 / 2e-94 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.002G037900 [exp] 303 / 7e-106 AT1G06200 264 / 2e-90 Peptidase S24/S26A/S26B/S26C family protein (.1) Potri.007G071400 [exp] 60 / 3e-11 AT1G53530 194 / 7e-64 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.005G092900 [exp] 59 / 4e-11 AT1G53530 189 / 5e-62 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.001G380400 [exp] 50 / 1e-07 AT1G53530 227 / 3e-77 Peptidase S24/S26A/S26B/S26C family protein (.1.2) Potri.016G115100 [exp] 48 / 4e-07 AT3G08980 204 / 3e-68 Peptidase S24/S26A/S26B/S26C family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022921 pacid=23160044 polypeptide=Lus10022921 locus=Lus10022921.g ID=Lus10022921.BGIv1.0 annot-version=v1.0 ATGGCTTCCTTATCGACTTGGTGCCGCTACTTAGTCAACAAATTGGATTACTCCCTCTCCATCAGCCGCAAGAGCCTGAGGGCAGGTCAAATTGCTGATT CAGAGATTGCTAATACGATGTTGAAAAATGTATTGCAAGGAAGGCTGACATATTTACTCTGGAATAAAGGACCCGAAATGGCTCCGACAGTTGGAGATGA AGGTGGGACACTTCTTGTCCGGAAATTGCCTTCTGCAGATCCAACGCGAGTTTTTGTTGGAGACGTCGTGGTTTTAAAAGACCCTATTCAAGAAGACAAA TACCTTGTAAGGCGATTGGCTGCAGTTGAAGGGTATGAGATGGTCTCTAATGACGAAAAAGACGAGCCCTTTGTTCTTGACAGAGAAGAATGTTGGGTGG TTGCTGATAATGAGAAACTGAAAGCCAAGGAAGCAAACGACAGTCGGAAATTTGGTCCAGTTCCAATGTCAAACATAGTCGGCCGAGCTATATACTGTCT GCGAACAGCGGTGGACCATGGCCCCGTCCAGAACAGTGAGTTCAGCATGGGGAGGGATCTGCCGGTGTTGGAAGTGGAGCTGGATGTTGAAGAGATGGCT AAGAATCACAAAGCATAG
AA sequence Show only first row Show all	>Lus10022921 pacid=23160044 polypeptide=Lus10022921 locus=Lus10022921.g ID=Lus10022921.BGIv1.0 annot-version=v1.0 MASLSTWCRYLVNKLDYSLSISRKSLRAGQIADSEIANTMLKNVLQGRLTYLLWNKGPEMAPTVGDEGGTLLVRKLPSADPTRVFVGDVVVLKDPIQEDK YLVRRLAAVEGYEMVSNDEKDEPFVLDREECWVVADNEKLKAKEANDSRKFGPVPMSNIVGRAIYCLRTAVDHGPVQNSEFSMGRDLPVLEVELDVEEMA KNHKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	0	1
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	1.0	0.9095
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	2.0	0.9060
AT1G66930			Protein kinase superfamily pro...		Lus10022367 [exp]	2.4	0.8833
AT3G02220			unknown protein		Lus10043249 [exp]	2.4	0.8998
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10019829 [exp]	3.6	0.8601
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10039887 [exp]	3.7	0.8808
AT3G05760	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10010928 [exp]	4.0	0.8923
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	5.5	0.8688
AT3G02220			unknown protein		Lus10019392 [exp]	5.8	0.8536
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	9.5	0.8328

Compare expression of checked genes

Lus10022921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.