Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06210 368 / 4e-126 ENTH/VHS/GAT family protein (.1.2) AT5G16880 226 / 3e-70 Target of Myb protein 1 (.1.2.3) AT4G32760 101 / 3e-23 ENTH/VHS/GAT family protein (.1.2) AT5G01760 96 / 2e-21 ENTH/VHS/GAT family protein (.1) AT2G38410 88 / 9e-19 ENTH/VHS/GAT family protein (.1) AT1G21380 86 / 4e-18 Target of Myb protein 1 (.1) AT3G08790 84 / 2e-17 ENTH/VHS/GAT family protein (.1) AT1G76970 83 / 3e-17 Target of Myb protein 1 (.1) AT5G63640 69 / 1e-12 ENTH/VHS/GAT family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024896 [exp] 638 / 0 AT1G06210 387 / 3e-134 ENTH/VHS/GAT family protein (.1.2) Lus10013788 [exp] 222 / 8e-69 AT5G16880 509 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10040912 [exp] 217 / 6e-67 AT5G16880 539 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10005924 [exp] 217 / 7e-67 AT5G16880 541 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10039144 [exp] 215 / 4e-66 AT5G16880 516 / 0.0 Target of Myb protein 1 (.1.2.3) Lus10022753 [exp] 98 / 5e-22 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 96 / 5e-21 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10022140 [exp] 95 / 8e-21 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10014155 [exp] 94 / 1e-20 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038000 [exp] 446 / 2e-156 AT1G06210 409 / 7e-142 ENTH/VHS/GAT family protein (.1.2) Potri.005G225000 [exp] 437 / 1e-152 AT1G06210 402 / 6e-139 ENTH/VHS/GAT family protein (.1.2) Potri.013G082500 [exp] 237 / 1e-74 AT5G16880 553 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.019G050000 [exp] 237 / 1e-74 AT5G16880 573 / 0.0 Target of Myb protein 1 (.1.2.3) Potri.016G131900 [exp] 100 / 1e-22 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 94 / 2e-20 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.006G241000 [exp] 94 / 2e-20 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.018G039100 [exp] 93 / 2e-20 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.004G138600 [exp] 64 / 6e-11 AT5G63640 447 / 1e-155 ENTH/VHS/GAT family protein (.1) Potri.T005401 [exp] 49 / 3e-06 AT5G63640 449 / 1e-156 ENTH/VHS/GAT family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10022922 pacid=23159957 polypeptide=Lus10022922 locus=Lus10022922.g ID=Lus10022922.BGIv1.0 annot-version=v1.0 ATGGACAAGCTGAAATTGGCTGAATGGGGTGAGAAATTGAGGACTGGCGGGGCTCAGATGAGTCGGGTTGTTAGCGATAAGATGAAGGAAATTCTGCAGG CACCTACTCCGGAATCGAAGATGGTCGACGACGCTACGGCCGAGACCATGGCGGAGCCGAACTGGGGGTTGAATTTGAGGATATGCGCCCTGATCAACAG CGAGGAGTTTAATTGCGCAGATGTTGTGAGGGCCATAAAAAAGAAGATTTCTGGCAAGAGTGAGGTGGGGCAGAGGTTGAGCCTTGATTTGCTCGAGGCT TGTACAATGAACTGCGAGAAAGTGTTCTCTGCAGTTGCTTCCGAGAAGGCATTGGATGAAATGATCAAGTTGATTGACAACCCTCTGTCGGATCATGAGA ACCGGAGCCGTGCCATGCAGTTAATTGCAGCTTGGGGGGAATCGGAAGATCTCGAGTATCTGCCAGTTTTTCGTCAGACTTACATGGTATTTCCTTTCCT CCGTTTGCAAAGTGTTGGTAAATTGACTGAATGTCAGCTCTTTGTTTGCTCTTATTTGTTGCCCCAGACCTTGAAACAAAGAAGCGTGTTACCTGAGGGA AATGTTGCACCGGTGGAAAATTCCCTCGAGTCCTATTTCCAGCCTATGCCTCCTCCCGGAAGCTATCCTGTTCCTGATTCTGGATTGCCTGGATTGGGAC AAGGCACCTTCCCACAAAACTACCTATCAGCGGAGGAAAAGAATGAAGTCCTCGTGACAACAAGGAACAGCCTTGAACTTCTCTCTAGCATTTTAAATGC AGAAACAGAGCCAAAACCCATCAAGGAGGATCTAACGGTGAGCTTGTACGAGAAGTGCAAGCAGTCGCAGCCTGCTGTTAAGCAGCTCATAGAAAGCACC ACCGACGACGAGGCAATGCTGTTCGAGGCCCTCAATCTCCACGACGAGCTTCAGCGAGTCGTCTCCCAGTATAAAGATCTTGAAGCTGGCCTAAACTCCG CAGAGCAATCAGTTAAATCTCCCGAAAGCTTGGAGCCTGCTCCTGCTGTTATTACCGTGAGTCAGGATCATGGCAAGTTACCAGAAGGGGAGGCTGCCGA ATCCAGCATAGGTGAGAACCGGAAGAGCATTATCGACATGAAAGCTGGGAACTGA
AA sequence Show only first row Show all	>Lus10022922 pacid=23159957 polypeptide=Lus10022922 locus=Lus10022922.g ID=Lus10022922.BGIv1.0 annot-version=v1.0 MDKLKLAEWGEKLRTGGAQMSRVVSDKMKEILQAPTPESKMVDDATAETMAEPNWGLNLRICALINSEEFNCADVVRAIKKKISGKSEVGQRLSLDLLEA CTMNCEKVFSAVASEKALDEMIKLIDNPLSDHENRSRAMQLIAAWGESEDLEYLPVFRQTYMVFPFLRLQSVGKLTECQLFVCSYLLPQTLKQRSVLPEG NVAPVENSLESYFQPMPPPGSYPVPDSGLPGLGQGTFPQNYLSAEEKNEVLVTTRNSLELLSSILNAETEPKPIKEDLTVSLYEKCKQSQPAVKQLIEST TDDEAMLFEALNLHDELQRVVSQYKDLEAGLNSAEQSVKSPESLEPAPAVITVSQDHGKLPEGEAAESSIGENRKSIIDMKAGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	0	1
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Lus10006747 [exp]	2.8	0.8526
AT2G20560			DNAJ heat shock family protein...		Lus10017687 [exp]	7.3	0.8424
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	11.1	0.8299
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	12.0	0.7767
AT5G58020			unknown protein		Lus10036615 [exp]	14.9	0.7892
AT3G07090			PPPDE putative thiol peptidase...		Lus10025931 [exp]	15.2	0.7976
AT5G67320		HOS15	high expression of osmotically...		Lus10024972 [exp]	17.1	0.7722
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	18.9	0.8119
AT3G06170			Serinc-domain containing serin...		Lus10004430 [exp]	19.0	0.7852
AT1G26800			RING/U-box superfamily protein...		Lus10030464 [exp]	20.8	0.7867

Compare expression of checked genes

Lus10022922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.