Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54670 1466 / 0 ATSMC1, TTN8 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) AT5G48600 147 / 1e-35 ATSMC4, SMC4, ATCAP-C, ATSMC3 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) AT5G62410 113 / 5e-25 TTN3, ATSMC4, ATCAP-E1, SMC2 TITAN 3, structural maintenance of chromosomes 2 (.1) AT3G47460 85 / 2e-16 ATSMC2 Structural maintenance of chromosomes (SMC) family protein (.1) AT2G27170 75 / 3e-13 SMC3, TTN7 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) AT5G61460 54 / 1e-06 SMC6B, ATRAD18, MIM STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07660 53 / 1e-06 SMC6A structural maintenance of chromosomes 6A (.1) AT5G15920 47 / 8e-05 EMB2782, SMC5 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024895 [exp] 2197 / 0 AT3G54670 1604 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10021268 [exp] 1034 / 0 AT3G54670 849 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013583 [exp] 505 / 3e-169 AT3G54670 410 / 2e-133 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013582 [exp] 390 / 5e-127 AT3G54670 292 / 2e-91 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10013581 [exp] 172 / 9e-50 AT3G54670 167 / 4e-51 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Lus10005240 [exp] 146 / 3e-35 AT5G48600 1804 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10030681 [exp] 140 / 4e-33 AT5G48600 1723 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Lus10027215 [exp] 111 / 2e-24 AT3G47460 1795 / 0.0 Structural maintenance of chromosomes (SMC) family protein (.1) Lus10036169 [exp] 62 / 3e-09 AT2G27170 1368 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224900 [exp] 1583 / 0 AT3G54670 1540 / 0.0 TITAN8, STRUCTURAL MAINTENANCE OF CHROMOSOMES 1, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2), Structural maintenance of chromosomes (SMC) family protein (.3) Potri.017G083200 [exp] 132 / 7e-31 AT5G48600 1737 / 0.0 ARABIDOPSIS THALIANA STRUCTURAL MAINTENANCE OF CHROMOSOME 4, ARABIDOPSIS THALIANA CHROMOSOME ASSOCIATED PROTEIN-C, structural maintenance of chromosome 3 (.1.2) Potri.003G108400 [exp] 112 / 8e-25 AT5G62410 1732 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.009G155200 [exp] 88 / 3e-17 AT2G27170 1665 / 0.0 TITAN7, STRUCTURAL MAINTENANCE OF CHROMOSOMES 3, Structural maintenance of chromosomes (SMC) family protein (.1), Structural maintenance of chromosomes (SMC) family protein (.2) Potri.001G125000 [exp] 88 / 4e-17 AT5G62410 1771 / 0.0 TITAN 3, structural maintenance of chromosomes 2 (.1) Potri.001G262600 [exp] 49 / 4e-05 AT5G15920 1427 / 0.0 EMBRYO DEFECTIVE 2782, structural maintenance of chromosomes 5 (.1) Potri.003G107700 [exp] 47 / 0.0001 AT5G61460 1237 / 0.0 STRUCTURAL MAINTENANCE OF CHROMOSOMES 6B, hypersensitive to MMS, irradiation and MMC, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02463 [flax] [poplar] SMC_N RecF/RecN/SMC N terminal domain CL0023 [flax] [poplar] PF06470 [flax] [poplar] SMC_hinge SMC proteins Flexible Hinge Domain
Representative CDS sequence Show only first row Show all	>Lus10022923 pacid=23159946 polypeptide=Lus10022923 locus=Lus10022923.g ID=Lus10022923.BGIv1.0 annot-version=v1.0 ATGCCTGCGCTAGCCTCCCCAGGCAGAATTCTCCGATTGGAGATGGAGAACTTCAAGTCCTACAAGGGCTTCCAGTCAATTGGCCCTTTCAAGGACTTCA CCGCCATCGTTGGCCCCAACGGAGCCGGCAAGTCCAACTTGATGGACGCAATCAGCTTCGTCCTCGGCGTCCGTACGGGCCAGCTCCGTGGTGCTCAGCT CAAGGATCTCATCTACGCTTTCGACGACAAGGATAAGGAGCAGAAGGGCCGGAAAGCATTTGTGCGGCTGGTGTACCTGCTTGCTAGCGGGACGGAGCTT CACTTCACCCGCGGAATCACCAGCGCTGGTGCGAGCGAGTACCGCATCGATGGTAGGGTTGTTAACTGGGATGAGTATAATGGGAAGTTAAGGTCTCTGG GGATTCTTGTGAAGGCCAGAAACTTCTTGGTTTTTCAGGGGGATGTGGAGTCTATTGCATCCAAAAATCCCAAGGAGTTGACTGCGTTGCTTGAGCAAAT TTCTGGGTCGGGGGAATTCAAGAGGGAGTACGAGGATCTCGGAGAACAGAAAGGCAGGGCGGAAGAGAAAACAGCACTTGCCTATCAGAGGAAAAGAGCT ATTGTTGGGGAAAGGAAGCAGAAGAAAGCTCAGAAGGAGGAAGCTGAGAAGTATAATCGTTTGCAAGCTGAACTGAAATCTTTGAAGAGAGAACATTTCT TATGGCAATTGTTCACCATAGACAAGGACGTTAAAGAGTTAAATGACAAACTTGATGCTGAAACGACGGAGCGTGAAGGTGTTCTTCAGGAGCTTGTAAA GTTTGAAAAAGAAGCTTCTACCAAGAAGAAGGAGCAAGCCAAGTTCCTGAAAGAGATTACCCAATTAGAAAAGAAGATTGCTGACAGAAGCTCTAAGCTT GAAAAACATCAACCTGAGCTTCTGAAACTACACGAGGAAATGAAGCGCTTAAGTTCAAAAATTAAGAGCACCCGTAAGGACCTTGATAGGAGGAAAGAAG AACGGAGGAAAAATACAGGCGAAGTACAAGAATTACAGAGTGGCATAGAGGATATAATGGCGAAACTGAAAGATCTGACGGAGCGAAGCAAAGACAGTAG TGGAAAGCTTCCTCTGGCTGATAGTCAACTGGAAGAATACTTTAAAATCAAAGAGAATGCTGGGATGAAAACCAGCAGGCTGAGAGATGAAAAAGAGGTT TTGGACAGGCAACAACACGCTGATATGGAAGCTCAAAAAAATTTGGAAGAGAATCTTCAACAATTGAGAAATCGTGAACAGGAACTGACTGCACAGGAGG AGCAAATACGAACAAGACTTGAAAAGATTCTTGACACTTCTGCAAAACAGAAAGATGAGGTGGCAGAGTTGAAAAAAGAATTGCGTATGATACAAGATAA ACATCAGGATACCAAGAACAAGCACCAGAACTTGAAGTCCAAAATTGGAGAAATAGACAACCAACTGCGCGAACTGACAGCTGATAGATTTGAGAATCAG AGGGATGCTCGGTTGTCCGAAACAGTGGAGACTCTCCAACGGCTCTTCCAGGGAGTTCATGGACGCATGACTGGCCTTTGTAGACCAAAGCAAAAGAAAT ATAATTTGGCCGTCACTGTAGCTATGGGCAGATTCATGGATGCTGTGGTGGTTGAGGATGAAAATACAGGAAAAGAATGCATCAAGTATTTGAAACAGCA GAGGCTTCCTCCTATGACCTTTATACCCCTTCGGTCGATTCGTATAAAGCCAGTCCCTGAATGGATGCGTACCTTAGGGGACTTAACTGTTCTCACGTTT GATCCTGCACTGGAGAAGGCTATACTTTATGCTGTTGGAAATACTATGGTTTGTGATGATCTCGATGAAGCAAAGAAACTTGGATGGGATGGAAATGGAG AGAGAATTAAAGTTGTAACTGTTGACGGTACTCTCCTTACTAAGTCTGGAACAATGACTGGTGGTACTAGTGGTGGAATGGAAGCTAGGTCAACACAGTG GGATGATAAAAAGATCGAAGGGCTGAAGAAGAAGAAAGAACAATTTGAGTCTGAATTAGAGGAGCTAGGGTCACTTAGAGAAATTCATTTGAGAGAGTCT GAAGCATCTGGCAGGATCAGTGGTCTTGAAAAGAAAATCCAGTATGCAGAAATTGAGAAGAGAAGTATTGAGGACAAGCTCAAGAACTTGAAAAAGGAGA AGAAAACGGTCAAAGAAGAAATTAGTCGTCTGAGTCCAGAACTGCGGAAGTTGAAAGGTGCTATTGAAAAGAGAGGTGATTCCATAAGGACGGTGGAGGA TAAAATAAATAAGGTTGTTGATCGGATTTATGAAGATTTCAGTAGAAGTGTCGGTGTGGCAAATATACGCGAATATGAAGAGAACCATCTCAAGGCTGCC CAACATGTAGCTGAGGAAAGGCTTAGTTTAAGCAACCAGTTGTCGAAGTTGAAGTACCAATTGGAGTATGAGCAAAAGCGGGATGCAGGTGCGAGGATTA GAAAGCTGGAGTCTTCTCTAAATAATTTAGAGAATGAACTGAAACATTCTGAGAAAAAAGAGGCAGAAGTGAAGTCAACCGTAGAGAAAACAACAAGTGA GATTGATAGCTGGAAGGAAGAAGTGCAAGGGTGGAAATCCAAAGCAGAAGACTGTGACAAGGAAATTCAGGATTGGAAGAAGAAAGCTTCAGATGTTACA ACCAAAATTTCTAAGCTTGGCCGTACCATAAGCTCCCAGGAGGGACAGATTGAGCAGCTCTTGTCTCGCAAGCAAGACATAGTGGAAAAGTGTGAATTGG AACATATAAGCCTGCCAACTATTTCTGATCCCATGGAGACTGATTCTGCAGGGTCAGGCCCATTCTTCAACTTCAGTGAGCTGGATAGATCTCTGCTTCA GGATAAGAGGGCTGTGGATAGAGAGAAAACAGATCAGGAGTTTAAGAAAAATATGGACGCAAAAATATCTGAAATTGAAAGAACTGCTCCACACTTGAAG GCCCTAGACCAGTATGACGCCTTGCTGCAGAAGGAAAGGGAAGTATCTAAAGAGTTTGACTTAGCCAATAAGGAGGAGAGTCAGGTGGCTGATGCTTATA ACTCTGTTACAAAAAAGAGATGTGACTTGTTCATGGACGCTTTCAATCACATATCAAAGATAATTGATAAGATTTACAAGCAGTTAACAAAGAGCAACAC ACATCCTCTTGGGGGGACAGCATACCTGAACCTGGAAAATGAAGATGAGCCATACTTACACGGCATCAAGTTCACAGCCATGCCCCCGACAAAACGTTTC CGAGATATGGAACAACTGTCTGGCGGTGAGAAAACCGTTGCAGCACTTGCTTTGCTTTTCGCCATCCACAGCTATAGGCCGTCACCGTTTTTCATATTGG ACGAAGTCGACGCTGCGCTGGATAACTTAAACGTCGCCAAAGTTGCTAGGTTCATTCGCTCGAAATCGTGTCAAGAGACTCGGATGAATGACAAAAACGA ACAAGAAGAAGCTAATCTTGACGACGAGAATGGAAGTGGTTTCCAGAGCATCGTGATCTCTCTGAAAGACAGCTTTTACGACAAGGCCGAAGCTCTGATC GGGGTTTATAGAGAAGCCGATCGAGGCTACTCAAGAACTCTGACGTTCGACCTGACTGGTTACCGTGAATAG
AA sequence Show only first row Show all	>Lus10022923 pacid=23159946 polypeptide=Lus10022923 locus=Lus10022923.g ID=Lus10022923.BGIv1.0 annot-version=v1.0 MPALASPGRILRLEMENFKSYKGFQSIGPFKDFTAIVGPNGAGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDKDKEQKGRKAFVRLVYLLASGTEL HFTRGITSAGASEYRIDGRVVNWDEYNGKLRSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSGEFKREYEDLGEQKGRAEEKTALAYQRKRA IVGERKQKKAQKEEAEKYNRLQAELKSLKREHFLWQLFTIDKDVKELNDKLDAETTEREGVLQELVKFEKEASTKKKEQAKFLKEITQLEKKIADRSSKL EKHQPELLKLHEEMKRLSSKIKSTRKDLDRRKEERRKNTGEVQELQSGIEDIMAKLKDLTERSKDSSGKLPLADSQLEEYFKIKENAGMKTSRLRDEKEV LDRQQHADMEAQKNLEENLQQLRNREQELTAQEEQIRTRLEKILDTSAKQKDEVAELKKELRMIQDKHQDTKNKHQNLKSKIGEIDNQLRELTADRFENQ RDARLSETVETLQRLFQGVHGRMTGLCRPKQKKYNLAVTVAMGRFMDAVVVEDENTGKECIKYLKQQRLPPMTFIPLRSIRIKPVPEWMRTLGDLTVLTF DPALEKAILYAVGNTMVCDDLDEAKKLGWDGNGERIKVVTVDGTLLTKSGTMTGGTSGGMEARSTQWDDKKIEGLKKKKEQFESELEELGSLREIHLRES EASGRISGLEKKIQYAEIEKRSIEDKLKNLKKEKKTVKEEISRLSPELRKLKGAIEKRGDSIRTVEDKINKVVDRIYEDFSRSVGVANIREYEENHLKAA QHVAEERLSLSNQLSKLKYQLEYEQKRDAGARIRKLESSLNNLENELKHSEKKEAEVKSTVEKTTSEIDSWKEEVQGWKSKAEDCDKEIQDWKKKASDVT TKISKLGRTISSQEGQIEQLLSRKQDIVEKCELEHISLPTISDPMETDSAGSGPFFNFSELDRSLLQDKRAVDREKTDQEFKKNMDAKISEIERTAPHLK ALDQYDALLQKEREVSKEFDLANKEESQVADAYNSVTKKRCDLFMDAFNHISKIIDKIYKQLTKSNTHPLGGTAYLNLENEDEPYLHGIKFTAMPPTKRF RDMEQLSGGEKTVAALALLFAIHSYRPSPFFILDEVDAALDNLNVAKVARFIRSKSCQETRMNDKNEQEEANLDDENGSGFQSIVISLKDSFYDKAEALI GVYREADRGYSRTLTFDLTGYRE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	0	1
AT2G27170		SMC3, TTN7	TITAN7, STRUCTURAL MAINTENANCE...		Lus10036169 [exp]	1.0	0.8942
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10018440 [exp]	1.4	0.8699
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	1.7	0.8653
AT3G21480			BRCT domain-containing DNA rep...		Lus10033984 [exp]	3.2	0.8219
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10016761 [exp]	3.2	0.8358
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	4.6	0.8297
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	5.2	0.8254
AT5G07400	FHA		forkhead-associated domain-con...		Lus10032515 [exp]	5.3	0.7968
AT5G63200			tetratricopeptide repeat (TPR)...		Lus10013661 [exp]	5.5	0.8128
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10016691 [exp]	7.2	0.7974

Compare expression of checked genes

Lus10022923 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.