Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30360 885 / 0 ERD4 early-responsive to dehydration 4, Early-responsive to dehydration stress protein (ERD4) (.1) AT4G02900 295 / 1e-88 ERD (early-responsive to dehydration stress) family protein (.1) AT1G32090 290 / 8e-87 early-responsive to dehydration stress protein (ERD4) (.1) AT3G21620 283 / 2e-84 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 280 / 2e-83 ERD (early-responsive to dehydration stress) family protein AT4G15430 280 / 3e-83 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2) AT1G11960 273 / 2e-80 ERD (early-responsive to dehydration stress) family protein (.1) AT4G04340 266 / 3e-78 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT1G62320 262 / 1e-76 ERD (early-responsive to dehydration stress) family protein (.1) AT3G01100 210 / 4e-58 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024894 [exp] 1252 / 0 AT1G30360 948 / 0.0 early-responsive to dehydration 4, Early-responsive to dehydration stress protein (ERD4) (.1) Lus10002133 [exp] 293 / 9e-88 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10020032 [exp] 292 / 1e-87 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10015551 [exp] 292 / 2e-87 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10030024 [exp] 289 / 1e-86 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10035300 [exp] 289 / 1e-86 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10000660 [exp] 281 / 1e-83 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 280 / 2e-83 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10024477 [exp] 264 / 3e-77 AT1G11960 1072 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G358300 [exp] 904 / 0 AT1G30360 892 / 0.0 early-responsive to dehydration 4, Early-responsive to dehydration stress protein (ERD4) (.1) Potri.004G006100 [exp] 285 / 3e-85 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.001G133800 [exp] 281 / 3e-83 AT1G32090 1061 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.003G099800 [exp] 281 / 4e-83 AT1G32090 1094 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G226800 [exp] 271 / 6e-80 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.014G156100 [exp] 270 / 1e-79 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.011G009900 [exp] 266 / 4e-78 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006000 [exp] 257 / 8e-75 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G115800 [exp] 245 / 8e-71 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.004G005900 [exp] 245 / 2e-70 AT4G22120 1151 / 0.0 ERD (early-responsive to dehydration stress) family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [flax] [poplar] Anoctamin-like PF02714 [flax] [poplar] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate
Representative CDS sequence Show only first row Show all	>Lus10022924 pacid=23160032 polypeptide=Lus10022924 locus=Lus10022924.g ID=Lus10022924.BGIv1.0 annot-version=v1.0 ATGGATTTCAGCTCCTTTCTGACGTCCTTAGGGACGTCTTTCGTCATCTTCCTCATTCTGATGTTCCTCTTCGCCTGGCTTTCCCGCCGCCCAAGCAACA CCGTCATCTACTACCCTAACCGGATCTTGAAAGGCATGGACCCTCTCGAAGGCGGCGCCACTTCCTCCTCCCGAAATCCATTTTCATGGATCCGGGAAGC TACTTCTTCTACTGAGCAAGATGTCATCACTATGTCCGGCGTCGACACCGCCGTCTACTTCGTCTTCCTCTCCACCGTGTTGGGTATATTCACGGTGTCT GGACTAGTCCTGCTCCCAGTGCTACTCCCAGTGGCTATGACGGACAACAACCTCAACAAAGGCAGGGACTCTGACGTCAGCAACAACACTTTCGACGATC TCGACAAACTCTCCATGGGAAACATTACGGAGAAGAGTCCCAGGCTATGGGCGTTCCTACTTGCGACCTACTGGGTTTCTGTGGTTACCTACTGGTTCTT GTGGAAGGCTTACCATCATGTTTCGGCGCTTAGAGCAACTGCTCTTATGTCACCCCATGTAGGGAAATCCGAGCAGTATGCTGTTCTTGTTAGGGACATT CCTCCTCCTACCTCTGGCGTATCCATGAAGGAGCATGTTGATTCCTACTTCAAGGATATCCACCCTGACACGTTTTATAGATCCATGCTTGTCACTGACA ACAAAAAGGTTAACAAAATCTACCAAGAACTGGAGGAGTACAAGAAGAAGCTTGATCGTGCTGAGGCTATATTTGCGAAGTCCAAAGAAACAGGGAAGCA GCCGGAGGGAGTTAGACCCACCAACAGAATTGGGTTTATGGGCCTCTTTGGTAAAAAAGTGGACAGCATTGAATATTTCAATGAAAAGATCAATGAGCTT GTTTCCAAATTGGAAGCTGAACAGAAATCTACGCTCACGGAGAAGCATCAATCATCAGCTATCGTCTTCTTTACCAGCAGGGTGGCAGCAGCTTCAGCAG CTCAGTCTCTCCATGCTCAGATAGCCAACAAGTGGACTGTCACAGAAGCTCCGGAGCCTCGTCAAATGTTGTGGACCAATCTCAACATGAACTTCTTCAT GAGGCAAATCCGCCAGTACATTGTCTACGTAGTCGTCGCCCTGACCATATTCTTTTACATGATACCGATTGGGATTATCTCGGCCTTCACCACTCTTGAT AACCTGAAAAAGTTGCTTCCTTTCTTGAAGCCAGTTCTGAAAATTACCATCATCAGAACCGTGTTGGGAGCTTACCTCCCTCAGATTGCACTCCTTGTGT TTCTGGCTATGTTGCCTAAGTTGCTTCTGTTTCTCTCCAAGGCAGAAGGGATCCCTTCGGAGAGTCATGCGATAAGAGCTGCTTCGGGAAAGTACTTCTA CTTCAATGTCTTGAATGTTTTCATCGGTGTTACTGTGGGCAACACATTGTTCAATACATTCAAGGATATTGAGAAGGATCCTAATTCCGCCATTGATATT ATAGCCACTAGCCTTCCTGGAAGTGCCACTTTCTTTCTCACATACGTGGCTCTGAAGTTCTTTGTAGGGTATGGACTCGAGCTCTCCCGGATTGTACCTC TCATCATCTTCCACCTTAAGAAGAAGTATCTTTGCAAGACCGAAGCTGAGGTTAAGGAGGCCTGGACTCCGGGAGATCTAGGTTATGTAACTAGAATTCC GGGAGACATGCTTATCGTTACGCTCATGTTCTGCTACTCGGTGATAGCCCCTCTGATCATCCTGTTTGGTGTCATTTACTTTGGACTTGGCTGGCTTCTC CTTCGAAATCAGGCGCTGAAAGTGTACGTACCGAAATTCGAAAGCTATGGAAGGATGTGGCCTCACATCCATACGAGGATTGTTGCATCTCTGCTACTCT ACCAAGTTCTGATGTTCGGTTACTTGGGGATCAAGAAATTCTACTACACTCCGATCGTGATCATACTCCCAATCACCACCTTGATCTTCGCTTTTGTCTG TCGCAAGAAGTTCTACCGAGGATTCAGCAGCACGGCACTCGAGGTAGCTGCTGGTCGTGAAGTGAAGGAGGAAGAGACACCGAACATGGAGCAGGTGTAC AGGGCATACGTGCCGCATTGCTTGAGCTCTGATAAGGTAGAGGATGATCATCAGTATGTGGATGCAGTGGCAAGAATCGGAGCTTTGGCTTAA
AA sequence Show only first row Show all	>Lus10022924 pacid=23160032 polypeptide=Lus10022924 locus=Lus10022924.g ID=Lus10022924.BGIv1.0 annot-version=v1.0 MDFSSFLTSLGTSFVIFLILMFLFAWLSRRPSNTVIYYPNRILKGMDPLEGGATSSSRNPFSWIREATSSTEQDVITMSGVDTAVYFVFLSTVLGIFTVS GLVLLPVLLPVAMTDNNLNKGRDSDVSNNTFDDLDKLSMGNITEKSPRLWAFLLATYWVSVVTYWFLWKAYHHVSALRATALMSPHVGKSEQYAVLVRDI PPPTSGVSMKEHVDSYFKDIHPDTFYRSMLVTDNKKVNKIYQELEEYKKKLDRAEAIFAKSKETGKQPEGVRPTNRIGFMGLFGKKVDSIEYFNEKINEL VSKLEAEQKSTLTEKHQSSAIVFFTSRVAAASAAQSLHAQIANKWTVTEAPEPRQMLWTNLNMNFFMRQIRQYIVYVVVALTIFFYMIPIGIISAFTTLD NLKKLLPFLKPVLKITIIRTVLGAYLPQIALLVFLAMLPKLLLFLSKAEGIPSESHAIRAASGKYFYFNVLNVFIGVTVGNTLFNTFKDIEKDPNSAIDI IATSLPGSATFFLTYVALKFFVGYGLELSRIVPLIIFHLKKKYLCKTEAEVKEAWTPGDLGYVTRIPGDMLIVTLMFCYSVIAPLIILFGVIYFGLGWLL LRNQALKVYVPKFESYGRMWPHIHTRIVASLLLYQVLMFGYLGIKKFYYTPIVIILPITTLIFAFVCRKKFYRGFSSTALEVAAGREVKEEETPNMEQVY RAYVPHCLSSDKVEDDHQYVDAVARIGALA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10022924 [exp]	0	1
AT1G30360		ERD4	early-responsive to dehydratio...		Lus10024894 [exp]	1.0	0.9334
AT4G18630			Protein of unknown function (D...		Lus10025403 [exp]	2.0	0.9059
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10036540 [exp]	2.4	0.8772
AT2G22730			Major facilitator superfamily ...		Lus10019244 [exp]	2.6	0.8611
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10034568 [exp]	6.7	0.8609
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10026996 [exp]	7.3	0.8678
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	7.5	0.8762
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	8.9	0.8728
AT4G37220			Cold acclimation protein WCOR4...		Lus10012035 [exp]	9.7	0.8279
AT5G16720			Protein of unknown function, D...		Lus10002289 [exp]	10.8	0.8476

Compare expression of checked genes

Lus10022924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.