Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45100 536 / 0 SETH2 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G37180 51 / 1e-06 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT5G01220 50 / 2e-06 SQD2 sulfoquinovosyldiacylglycerol 2 (.1) AT1G78800 45 / 6e-05 UDP-Glycosyltransferase superfamily protein (.1) AT1G73370 45 / 7e-05 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G20830 43 / 0.0002 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024892 [exp] 619 / 0 AT3G45100 731 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Lus10034760 [exp] 62 / 2e-10 AT4G19460 636 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10033297 [exp] 60 / 1e-09 AT4G19460 620 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014499 [exp] 57 / 6e-09 AT1G73160 616 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10032187 [exp] 53 / 2e-07 AT1G73160 615 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10002499 [exp] 51 / 9e-07 AT5G01220 721 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10004832 [exp] 50 / 1e-06 AT5G01220 629 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Lus10020791 [exp] 49 / 4e-06 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 49 / 6e-06 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130000 [exp] 560 / 0 AT3G45100 749 / 0.0 UDP-Glycosyltransferase superfamily protein (.1.2) Potri.011G097000 [exp] 61 / 3e-10 AT1G73160 657 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G097600 [exp] 56 / 2e-08 AT5G01220 750 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.016G112600 [exp] 56 / 2e-08 AT5G01220 727 / 0.0 sulfoquinovosyldiacylglycerol 2 (.1) Potri.009G038400 [exp] 54 / 8e-08 AT5G59070 609 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G139100 [exp] 46 / 4e-05 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.006G136700 [exp] 45 / 7e-05 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.018G063500 [exp] 45 / 8e-05 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.015G029100 [exp] 43 / 0.0003 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF08288 [flax] [poplar] PIGA PIGA (GPI anchor biosynthesis)
Representative CDS sequence Show only first row Show all	>Lus10022925 pacid=23159944 polypeptide=Lus10022925 locus=Lus10022925.g ID=Lus10022925.BGIv1.0 annot-version=v1.0 ATGATGGGATCTAACAAGCATAGGATATTAATGGTTTCTGATTTTTTCTACCCCAACTTTGGTGGTGTGGAAAATCACATATATTATCTCTCCCAATGCC TGCTAGAGCTTGGTCACAAGGTAATAGTTCTGACCCATGCGTATGGTAATCGCTCCGGTGTGAGATACATGACAGGGGGGCTGAAAGTTTATTACATACC ATGGAGGCCGTTTCTGATGCAGAACACATTGCCTACCTTTTACGGCACGCTTCCGATCATAAGAACCATACTTATTCGAGAACAAATATCGTTGGTCCAC GGACACCAGGCTTTCTCAACTCTTTGTCACGAGGCATTGATGCATGCACCTGACGTCATACAAGCCATATGTGTTTCTCATACAAGCAAGGAAAACACGG TGCTTCGGTCAGGTATACAGCCAGAAAATGTCTACGTTATCCCAAATGCTGTGGATACCGCTATGTTCAAGCCCGCAGAAGAACAACCTGGTGGTAATGA AATTGTTATTGTTGTGATAAGTAGATTGGTTTATCGTAAGGGAGCGGATTTGCTTGTTGAGGTCATCCCAGAAGTCTGTCGGTTGTATCCCAATGTCCTC ATTGTTGGAGGTGATGGGCCGAAACGAGTGCGTCTAGAAGAAATGAGGGAAAATCATTCCCTCCAAGACCGGGTCGAGATGCTGGGTGCTGTTCCACATG CTTCGGTTCGATCTGTATTGGTTTCGGGCCAAATATTCTTAAACAGTTCTCTGACTGAAGCATTCTGCATAGCCATTTTAGAAGCTGCGAGTTGCGGGTT ACTTACGGTCAGCACCCGCGTTGGAGGTGTTCCGGAGGTTCTACCTGATGACATGATTGTACTTGCACAGCCTGATCCTACTGATATGGTGCAAGCGATC AAGAAGGCGATATCTTTGCTTCCCGAAATTGATCCTCAAGTAATGCACGAACGTCTCGGAAAGAATTATGTACATAGTGGTGTACTCATTCAAGAAGTGT GTACATGGGCATGA
AA sequence Show only first row Show all	>Lus10022925 pacid=23159944 polypeptide=Lus10022925 locus=Lus10022925.g ID=Lus10022925.BGIv1.0 annot-version=v1.0 MMGSNKHRILMVSDFFYPNFGGVENHIYYLSQCLLELGHKVIVLTHAYGNRSGVRYMTGGLKVYYIPWRPFLMQNTLPTFYGTLPIIRTILIREQISLVH GHQAFSTLCHEALMHAPDVIQAICVSHTSKENTVLRSGIQPENVYVIPNAVDTAMFKPAEEQPGGNEIVIVVISRLVYRKGADLLVEVIPEVCRLYPNVL IVGGDGPKRVRLEEMRENHSLQDRVEMLGAVPHASVRSVLVSGQIFLNSSLTEAFCIAILEAASCGLLTVSTRVGGVPEVLPDDMIVLAQPDPTDMVQAI KKAISLLPEIDPQVMHERLGKNYVHSGVLIQEVCTWA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Lus10022925 [exp]	0	1
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	3.5	0.8555
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Lus10040013 [exp]	7.7	0.7728
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10016729 [exp]	7.9	0.8425
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10015305 [exp]	20.7	0.7333
AT1G79190			ARM repeat superfamily protein...		Lus10001243 [exp]	28.8	0.7794
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	32.0	0.7521
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	33.6	0.7014
AT3G58160		XI-16, MYA3, AT...	MYOSIN XI-16, MYOSIN A3, MYOSI...		Lus10014753 [exp]	38.7	0.7494
AT5G41150		ATRAD1, UVH1	ULTRAVIOLET HYPERSENSITIVE 1, ...		Lus10011024 [exp]	43.9	0.7124
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	48.0	0.7574

Compare expression of checked genes

Lus10022925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.