Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41020 355 / 1e-115 MYB myb family transcription factor (.1) AT5G11050 48 / 1e-05 MYB ATMYB64 myb domain protein 64 (.1) AT4G32730 48 / 2e-05 MYB ATMYB3R-1, PC-MYB1, ATMYB3R1 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) AT5G11510 47 / 2e-05 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT4G00540 45 / 8e-05 MYB MYB3R-2, PC-MYB2, ATMYB3R2 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-2, myb domain protein 3r2 (.1.2) AT5G58850 43 / 0.0006 MYB ATMYB119 myb domain protein 119 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041714 [exp] 541 / 0 AT5G41020 337 / 1e-108 myb family transcription factor (.1) Lus10024036 [exp] 528 / 0 AT5G41020 336 / 3e-108 myb family transcription factor (.1) Lus10022932 [exp] 178 / 6e-53 AT5G41020 112 / 7e-29 myb family transcription factor (.1) Lus10011687 [exp] 52 / 2e-06 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 52 / 2e-06 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G095000 [exp] 448 / 6e-150 AT5G41020 410 / 1e-134 myb family transcription factor (.1) Potri.003G168900 [exp] 444 / 7e-149 AT5G41020 398 / 1e-130 myb family transcription factor (.1) Potri.018G038000 [exp] 54 / 3e-07 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.006G241700 [exp] 53 / 4e-07 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022926 pacid=23160022 polypeptide=Lus10022926 locus=Lus10022926.g ID=Lus10022926.BGIv1.0 annot-version=v1.0 ATGGTGAATGGGGAGGCTGGATCGACAGAGTTTGTAAGTAGAATGGACAAAGGGAACAGTAAAAAGAAAAGGAAGAGAGTCAAGGGCGATAATTTGGTTG ATTCTAGTTCCTTAATAGGTCTAAGCGAGGTCGAGCATGGAGTTGGCTCCTTGAACAGAATTGAAGTTGGGAATTTTGACTCTCCAAATGAGAGGAGGAA GAAGAAGAAGAAGAAGAGAGAGAAGCATGGAAATGATCAGGAGGTAATGGATCACGAATTAGGGGAGGTGATGAATGAAAATTCTGAGTCGCAGAAGGAG GAGAAGAAGAAGAAAAAGAAAAAGAAGGAGAAGGAGAAGAAGAAGCAGCAGGTGGAGGAAAAGAAGCAGGAGAAGACGAAAGAGGAGGAGAGGGAGGAGG AAAAGAAGAAGAAGAAGAAAGAGGAGGAGGGGGAGGAGGAAAAGAAGAAGAAGAAGAAGAAGAAGGATAAGAAGAAAAAGCAGCTGATTGTTCAGGAGCC TGTATTGCTGGAGAACTCTGTGGGAGATGATGAAGCTACCACAAAAGAACTTGAAAACACAGAGTATTCAATAGACAGGACGAAGGACAAGAAGAGGAAA ACAAAGACACAAACTAATGATGTAGGAAAGAGGGTTGAAATAAATTCTGCAGCTACTGATGCTCTCGATAGCTCGCCGCCTAAATCGACACCGGATAGGG TGAGTTCTGCTGAAGATGAGGAGGTGTTGCCCAATTCCGATGATTCAAATGATGAGACCGCTTCCAAGGATAAGGAGTTGGTGAGAGGGAAGCGCTTCTC ACCTGAGGAGGACAAGTTGGTTCAAGCTGCTTGCTGGGATTATGTTAATTCCAAGGGTTTAGGTGATGAAGAAGGTATCCAAATGATTATGAACTGTAGG AAGCATAAAAAACTCAGGAACTGCTGGATGGAAATATGCGCTGCCATACCTTGGCGTCCACACGAAAGCGTACGCTACCGTGCTCATATCTTATTCGAAA GGGACTCGACTCGTAAATGGACAGAAGAAGACCGCGAGCTTGTGATGAAGTATCATGAAAAATGCGGCACAAATTGGAAACCTCTGGCCGACGCCATGGG AAAGCACAGGCATCATGTAAAAGATGCCTTCCGAAGGATGAAACTGAAGAACCTAAATTCGGGACGCTGGTCTCAAGACGAGTACCAAGCTTTCTACGAA CTGGTGAACACCGATCTGCGGATGAAGGCGTTTGGGGAAAGGAAGTCGAAGCACGGAATGCTGAGGGACAACATCAGCTGGACTGCGATCAGTGATAAGC TTGACACGAGGACCTTTGCCTCTTGCTGCGAGAAATGGTATAAACAGCTGGCTTCGCCGATGGTTGCTCAACAGCAATGGCTCGACACCGACGACTACCT CCTTGTGAACGAGCTTTACACCTTGGATGCTTGCTGCATGGAAGACGTGGACTGGGACTGCCTTTTGGAACATAGGACTGGAGACGTGTGCCGAAAGAGG TGGAATGAAATGGTGAAACACCTTGGTGAGGGTAGGAACAAGTCGTTTAGCGAACAGGTAGAGATTCTGGCGAAGAGATACACCCCTGATGTGCTTGAAG CTAGAGAGGCTTACTATAGCAAACCTGTTGTCGATTGA
AA sequence Show only first row Show all	>Lus10022926 pacid=23160022 polypeptide=Lus10022926 locus=Lus10022926.g ID=Lus10022926.BGIv1.0 annot-version=v1.0 MVNGEAGSTEFVSRMDKGNSKKKRKRVKGDNLVDSSSLIGLSEVEHGVGSLNRIEVGNFDSPNERRKKKKKKREKHGNDQEVMDHELGEVMNENSESQKE EKKKKKKKKEKEKKKQQVEEKKQEKTKEEEREEEKKKKKKEEEGEEEKKKKKKKKDKKKKQLIVQEPVLLENSVGDDEATTKELENTEYSIDRTKDKKRK TKTQTNDVGKRVEINSAATDALDSSPPKSTPDRVSSAEDEEVLPNSDDSNDETASKDKELVRGKRFSPEEDKLVQAACWDYVNSKGLGDEEGIQMIMNCR KHKKLRNCWMEICAAIPWRPHESVRYRAHILFERDSTRKWTEEDRELVMKYHEKCGTNWKPLADAMGKHRHHVKDAFRRMKLKNLNSGRWSQDEYQAFYE LVNTDLRMKAFGERKSKHGMLRDNISWTAISDKLDTRTFASCCEKWYKQLASPMVAQQQWLDTDDYLLVNELYTLDACCMEDVDWDCLLEHRTGDVCRKR WNEMVKHLGEGRNKSFSEQVEILAKRYTPDVLEAREAYYSKPVVD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41020	MYB		myb family transcription facto...		Lus10022926 [exp]	0	1
AT5G41020	MYB		myb family transcription facto...		Lus10024036 [exp]	1.4	0.8926
AT4G33230			Plant invertase/pectin methyle...		Lus10005678 [exp]	1.4	0.8823
AT5G47830			unknown protein		Lus10024804 [exp]	2.0	0.8325
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Lus10013398 [exp]	2.4	0.8486
AT3G24080			KRR1 family protein (.1.2)		Lus10028084 [exp]	3.2	0.8239
AT1G74250			DNAJ heat shock N-terminal dom...		Lus10017846 [exp]	4.9	0.8221
AT5G01840	OFP	AtOFP1	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006092 [exp]	4.9	0.7749
					Lus10012752 [exp]	6.3	0.8012
AT5G43490			unknown protein		Lus10003153 [exp]	8.4	0.8111
AT5G02490		AtHsp70-2	Heat shock protein 70 (Hsp 70)...		Lus10040304 [exp]	12.8	0.7938

Compare expression of checked genes

Lus10022926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.