Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 401 / 3e-136 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03880 358 / 2e-119 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT1G03890 351 / 8e-117 RmlC-like cupins superfamily protein (.1) AT4G28520 280 / 3e-88 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 125 / 6e-32 RmlC-like cupins superfamily protein (.1) AT1G07750 114 / 8e-28 RmlC-like cupins superfamily protein (.1) AT2G28490 47 / 3e-05 RmlC-like cupins superfamily protein (.1) AT5G26700 43 / 0.0002 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024891 [exp] 836 / 0 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 741 / 0 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022929 [exp] 627 / 0 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 442 / 7e-152 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 432 / 9e-148 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 426 / 2e-145 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 392 / 2e-132 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 390 / 2e-132 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 348 / 2e-116 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224700 [exp] 536 / 0 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 534 / 0 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 453 / 2e-156 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 451 / 2e-155 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 450 / 5e-155 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 439 / 1e-150 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 439 / 1e-150 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 320 / 2e-104 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 119 / 1e-29 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 115 / 2e-28 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10022927 pacid=23159910 polypeptide=Lus10022927 locus=Lus10022927.g ID=Lus10022927.BGIv1.0 annot-version=v1.0 ATGGCTAGATCATCAAGCCCTTTGCTTCTCTCACTCTGCATTTTCGCCATTCTCTTCCACTCTTCTCTGGGTAGGCAGCAATTCCAGCAGGGGAACGAGT GCCAGATCGACAGGATCGACGCATCCGAGCCGGACAAAACCATCCAGGCAGAAGCTGGCACCATCGAGGTATGGGACCAGAACCGCCAGCAATTCCAGTG CGCTGGTGTTGCCGTTGTAAGGCGCACCATTGAGCCCAAAGGTCTTCTCTTGCCTTTCTACAGCAACACCCCTCAGCTCATCTACATCGTTCAAGGTAGG GGAGTTACAGGAATCATGTTCCCAGGATGTCCAGAGACATTCGAGGAATCCCAGCAGCAAGGACAACAGGGCCAACAGGGTAGTTCCCAAGACCAGCACC AGAAGATCCGCCGCTTCCGTGAAGGTGACGTCATTGCCGTCCCTGCCGGTGTAGCCCACTGGTCCTACAACGATGGCAACGAACCAGTCATGGCCATTGT TGTCCATGACACTTCCAGCCACCTCAACCAACTGGACAACAACCCCAGGAACTTCTACTTGGCAGGAAACCCGAGAGACGAGTTCGAACAATCGCAGCAA GGAGGCAGGCTGAGCCGTGGGGAGAGTGAAGGTGGACGAGGACGCAGGGGAACCTCTTCAACCTGCAACAACCTCTTCTGCGGAATCGACTCCAAGCTCA TCGCGGAGGCGTTCAATGTCGACGAGAACGTGGCAAGGAGGCTACAGAGCGAGAACGACAACAGAGGCCAGATCGTCCGAGTCGAAGGCGAGCTCGACAT CGTCAGACCTCCGACCAGTATCCAGGAGGAGTCACAGGAGCAGGGAGGTCGTGGTGGTGGCCGCTACTACTCCAATGGAGTGGAGGAGACCTTCTGCTCC ATGAGACTAATTGAGAACATCGGCGATCCTTCTCGGGCAGACATTTTCACTCCAGAAGCCGGCCGCGTTAGATCCCTCAACAGCCACAACCTCCCCGTCC TGCAATGGATCCAGCTTAGCGCCGAGAGAGGCGTTCTCTACAATGAAGCGATCAGGCTGCCGCACTGGAACATCAACGCACACAGCATAGTGTACGCGAT CAGAGGACAAGCCAGAGTCCAGATCGTGAACGAGGAAGGGAATTCGGTGTTCGATGGAGTGCTGCAGGAAGGACAGGTGGTGACGGTGCCGCAGAACTTC GCGGTGGTAAAGAGATCCCAGAGCGAGAGGTTTGAGTGGGTGGCGTTCAAGACCAACGACAACGCGATGGTGAACTCGCTAGCCGGGAGGACATCGGCAG TAAGGGCGATCCCCGCGGATGTACTGGCTAACGCCTGGAGGGTGTCGCCGGAGGAGGCGAGGAGGGTGAAGTTCAACAGGCAGGAGACTCACTTGGCTAG CACCAGGGGCCAGTCCAGGTCGCCCGGGAGGTTGAATGTCGTCAAGGAGGTGATCAACTTGCTTATGTAA
AA sequence Show only first row Show all	>Lus10022927 pacid=23159910 polypeptide=Lus10022927 locus=Lus10022927.g ID=Lus10022927.BGIv1.0 annot-version=v1.0 MARSSSPLLLSLCIFAILFHSSLGRQQFQQGNECQIDRIDASEPDKTIQAEAGTIEVWDQNRQQFQCAGVAVVRRTIEPKGLLLPFYSNTPQLIYIVQGR GVTGIMFPGCPETFEESQQQGQQGQQGSSQDQHQKIRRFREGDVIAVPAGVAHWSYNDGNEPVMAIVVHDTSSHLNQLDNNPRNFYLAGNPRDEFEQSQQ GGRLSRGESEGGRGRRGTSSTCNNLFCGIDSKLIAEAFNVDENVARRLQSENDNRGQIVRVEGELDIVRPPTSIQEESQEQGGRGGGRYYSNGVEETFCS MRLIENIGDPSRADIFTPEAGRVRSLNSHNLPVLQWIQLSAERGVLYNEAIRLPHWNINAHSIVYAIRGQARVQIVNEEGNSVFDGVLQEGQVVTVPQNF AVVKRSQSERFEWVAFKTNDNAMVNSLAGRTSAVRAIPADVLANAWRVSPEEARRVKFNRQETHLASTRGQSRSPGRLNVVKEVINLLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022927 [exp]	0	1
AT1G53035			unknown protein		Lus10018600 [exp]	1.7	0.7846
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10038733 [exp]	5.0	0.7231
AT2G13620		ATCHX15	CATION/H+ EXCHANGER 15, cation...		Lus10030013 [exp]	6.9	0.7149
AT4G33355			Bifunctional inhibitor/lipid-t...		Lus10001703 [exp]	7.6	0.6451
AT2G37890			Mitochondrial substrate carrie...		Lus10016522 [exp]	12.8	0.7342
AT2G14045			unknown protein		Lus10042548 [exp]	16.1	0.6887
AT2G25760			Protein kinase family protein ...		Lus10038275 [exp]	20.5	0.6521
AT3G23510			Cyclopropane-fatty-acyl-phosph...		Lus10027378 [exp]	22.8	0.6897
AT5G58300			Leucine-rich repeat protein ki...		Lus10039483 [exp]	23.7	0.6212
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10016777 [exp]	26.4	0.6188

Compare expression of checked genes

Lus10022927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.