Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20515 167 / 9e-54 unknown protein AT2G42840 42 / 4e-05 PDF1 protodermal factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024890 [exp] 225 / 1e-76 AT2G20515 154 / 2e-48 unknown protein Lus10026279 [exp] 44 / 1e-05 AT2G16630 300 / 2e-100 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10042394 [exp] 43 / 3e-05 AT2G16630 281 / 4e-93 Pollen Ole e 1 allergen and extensin family protein (.1) Lus10007351 [exp] 42 / 4e-05 AT2G42840 170 / 5e-51 protodermal factor 1 (.1) Lus10007352 [exp] 41 / 4e-05 AT2G42840 132 / 3e-39 protodermal factor 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G038200 [exp] 176 / 3e-57 AT2G20515 189 / 2e-62 unknown protein Potri.005G224600 [exp] 171 / 2e-55 AT2G20515 177 / 8e-58 unknown protein Potri.004G169200 [exp] 46 / 3e-06 AT2G16630 186 / 1e-55 Pollen Ole e 1 allergen and extensin family protein (.1) Potri.005G200900 [exp] 45 / 4e-06 AT2G42840 163 / 4e-48 protodermal factor 1 (.1) Potri.002G060800 [exp] 44 / 1e-05 AT2G42840 167 / 4e-50 protodermal factor 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022928 pacid=23160042 polypeptide=Lus10022928 locus=Lus10022928.g ID=Lus10022928.BGIv1.0 annot-version=v1.0 ATGAAACACCAGCTCCGCTCCGCTCCTCTCCTCCGCCTCCTAATATGCATCCTCTTCTCCCTCTCCTCCGCAACCGCCCGTCCTGGCTTCCTCTACACCC GAACCCGAGGCCGCTGCACTCCCCAGTTCTGGAGCAGCAGGAGGGAAGCGTGGCCGCGGATGGTGCCCCAAACGGCGACGGTTTCCAACGTCTTCGGCTC CAGAGCACTCGAGAGGTACAGATCTGACTTAACCCTCCTCGAATCCGCCTCCCGAAACGACGACGTCGACAACCACCCTTACGTCCGCTTACTCCGCCAA GGAACCGCCGCTCTGCTGAACTCCTACTCCAGAAGGCCGCTCTCCCCCTTCACGCCCTGGCAGGTAAAGACTCTGCTCATCCAAGGCCTCGTCTCCGAGT CCGCTGCTTCTCGCCGCGCCGATCACTTCTCCGCCGCCAACAAGGCTTGTAGTTAA
AA sequence Show only first row Show all	>Lus10022928 pacid=23160042 polypeptide=Lus10022928 locus=Lus10022928.g ID=Lus10022928.BGIv1.0 annot-version=v1.0 MKHQLRSAPLLRLLICILFSLSSATARPGFLYTRTRGRCTPQFWSSRREAWPRMVPQTATVSNVFGSRALERYRSDLTLLESASRNDDVDNHPYVRLLRQ GTAALLNSYSRRPLSPFTPWQVKTLLIQGLVSESAASRRADHFSAANKACS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20515			unknown protein		Lus10022928 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Lus10039443 [exp]	2.8	0.9705
AT1G15190			Fasciclin-like arabinogalactan...		Lus10023183 [exp]	3.0	0.9481
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	4.0	0.9659
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10032379 [exp]	4.6	0.9614
					Lus10010480 [exp]	6.8	0.9340
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	7.5	0.9517
AT2G20515			unknown protein		Lus10024890 [exp]	7.5	0.9378
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	8.4	0.9562
AT2G30620			winged-helix DNA-binding trans...		Lus10006562 [exp]	10.2	0.9357
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	10.7	0.9556

Compare expression of checked genes

Lus10022928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.