Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 342 / 2e-113 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 315 / 4e-103 RmlC-like cupins superfamily protein (.1) AT1G03880 306 / 2e-99 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 226 / 5e-68 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 115 / 3e-28 RmlC-like cupins superfamily protein (.1) AT1G07750 104 / 2e-24 RmlC-like cupins superfamily protein (.1) AT2G18540 42 / 0.001 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024889 [exp] 793 / 0 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 653 / 0 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 643 / 0 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 391 / 4e-132 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 383 / 9e-129 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021179 [exp] 369 / 1e-123 AT5G44120 385 / 1e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 348 / 2e-115 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011816 [exp] 338 / 6e-112 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 302 / 1e-98 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224700 [exp] 481 / 1e-167 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 476 / 1e-165 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 389 / 3e-131 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 389 / 3e-131 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 385 / 4e-130 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004300 [exp] 384 / 3e-129 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 380 / 6e-128 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 264 / 3e-83 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 110 / 2e-26 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 105 / 7e-25 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10022929 pacid=23159927 polypeptide=Lus10022929 locus=Lus10022929.g ID=Lus10022929.BGIv1.0 annot-version=v1.0 ATGGCTAGATCAACCCCTTTGCTTCTCACATTCTGCATATTCGCCATTCTCCTACACTCTTCTCTGGGTAGGCAGCAATCCCAGCAGGGGAACGAGTGCA AGATCGACAGGATCGACGCATCCGAGCCGGACCACACCATCCAGGCAGAAGCTGGTACCGTTGAGGTATGGGATCAGTACCGCCAGCAATTCCAGTGCGC TGGTGTTGCCATGGTGAGACGTACCATTGAGCCCAATGGCCTCCTCTTGCCTTCCTACAGCAACACCCCTCAGCTCATCTACATCATTCAAGGAAATGGA CGCACAGGAATGCTGTTGCCAGGTTGCCCAGAGACATTCGAGGAATCACAACAGACCGGTCAACAAGGCTACAGAGGAGAACAACAGGGTACTTCCCAAG ACCAGCACCAGAAGATAGTCCGCTTCCGTAAAGGTGACGTCATTGCTATCCCCGCCTTATGTCAGACCTTCTACCTGGCTGGGAACCCTAGAGACGAGTT CGAGCAATCACAGCAGAAAAGATTACTTCTCAGCAGGGGCGACAGGCAAAGCCAAGGCAGCTGCAACAACCTCTTCTGCGGGATGGACTCCAGATTCCTG GCCGAGGCGTTCAACATCGACGAGAACTTGGCGAGGAAGTTGCAGAGCGAGAACGACAACAGGGGCAGCATCGTCCGAGTTGAAGGCGAGCTTGCCTTTG TGAGACCTCCGACCAGCATGAGGACAGAACGACAGGAGCAGGGAGGCAGCGGCAACGGAGACGAGCGGGGAGGAAGCGGCAGTGGACGCTACCACGCCAA TGGAGTGGAGGAGACCTTCTGTTCCATGAATATGGTTGAGAACATCGGCAAACCTTCTCGGGCCGACATTTTCACTCCGGAAGCCGGCCGCATCAGATCC CTCAACAGCCACAACCTCCCCGTCCTTCAATGGATCCAGCTCAGCGCCGAGAGAGGCGTTCTCTACGACGTAAAAGATCTCACTCACTCACTCACGCGCA GGCGAGGCGATCAGGCTGCCCCACTGGAACATCACTGCGCACATCATAACCACTGGAACATCAACGCGCACAGCATAATCTATGCGATCAGAGGGCAGGC AAGAGTCCAGATCGTGAACGAGAACGGGAACTCAGTGTTCGATGGAGTGCTACAGGAAGGACAGGTGGTGACGGTGCCGCAGAACTTCGCGGTGGTGAAG AGATCCCAGAGCGAGAGGTTCGAGTGGGTAGCGTTCAAGACAAACGACAACGCGATGGTGAACACGCTGGCCGGGAGGACATCGGCGATAAGGGCCATTC CGGCAGAGGTTCTGGCTAACGCTTGGAGGATGTCGCCGGAGGAGGCGAGGAGGTTGAAATTCAACCGCCAGGAGACTCACTTGGCCAGCACGAGGTCTCA GTCTTTCAGGGCTGAAGCTTAA
AA sequence Show only first row Show all	>Lus10022929 pacid=23159927 polypeptide=Lus10022929 locus=Lus10022929.g ID=Lus10022929.BGIv1.0 annot-version=v1.0 MARSTPLLLTFCIFAILLHSSLGRQQSQQGNECKIDRIDASEPDHTIQAEAGTVEVWDQYRQQFQCAGVAMVRRTIEPNGLLLPSYSNTPQLIYIIQGNG RTGMLLPGCPETFEESQQTGQQGYRGEQQGTSQDQHQKIVRFRKGDVIAIPALCQTFYLAGNPRDEFEQSQQKRLLLSRGDRQSQGSCNNLFCGMDSRFL AEAFNIDENLARKLQSENDNRGSIVRVEGELAFVRPPTSMRTERQEQGGSGNGDERGGSGSGRYHANGVEETFCSMNMVENIGKPSRADIFTPEAGRIRS LNSHNLPVLQWIQLSAERGVLYDVKDLTHSLTRRRGDQAAPLEHHCAHHNHWNINAHSIIYAIRGQARVQIVNENGNSVFDGVLQEGQVVTVPQNFAVVK RSQSERFEWVAFKTNDNAMVNTLAGRTSAIRAIPAEVLANAWRMSPEEARRLKFNRQETHLASTRSQSFRAEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	0	1
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	1.0	0.9469
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	2.4	0.9243
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	2.8	0.9125
AT2G45910			U-box domain-containing protei...		Lus10018835 [exp]	3.2	0.9277
					Lus10023010 [exp]	5.0	0.9170
					Lus10031873 [exp]	6.9	0.9215
					Lus10032433 [exp]	6.9	0.8873
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10028102 [exp]	7.9	0.9127
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Lus10027335 [exp]	8.1	0.8907
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10018672 [exp]	8.3	0.8739

Compare expression of checked genes

Lus10022929 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.