Plant FIBer expression Database

Lus10022930 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36070 462 / 6e-159 ATTIM44-2 translocase inner membrane subunit 44-2 (.1)
AT2G20510 447 / 9e-153 ATTIM44-1 translocase inner membrane subunit 44-1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003553
[exp]
600 / 0 AT2G36070 524 / 0.0 translocase inner membrane subunit 44-2 (.1)
Lus10024888
[exp]
543 / 0 AT2G36070 445 / 8e-154 translocase inner membrane subunit 44-2 (.1)
Lus10033894
[exp]
412 / 3e-141 AT2G20510 343 / 8e-116 translocase inner membrane subunit 44-1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G038300
[exp]
555 / 0 AT2G36070 584 / 0.0 translocase inner membrane subunit 44-2 (.1)
Potri.005G224500
[exp]
526 / 0 AT2G36070 545 / 0.0 translocase inner membrane subunit 44-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0051 NTF2 PF04280 Tim44 Tim44-like domain
Representative CDS sequence
>Lus10022930 pacid=23159900 polypeptide=Lus10022930 locus=Lus10022930.g ID=Lus10022930.BGIv1.0 annot-version=v1.0
ATGGCAGCTAGAAAGCTTGTCCGAGACTTGCTCTTAGCAAGGCAGCCTGTCCTCCAACAATTCAAGTCTCCTCAGGGTTTAGCCACGACGTCAAGGTTGC
TGGTGGACAATCGGTGGTCAAGTTGCCGGAGGTTTGGTGTGTTTAATAACGTTAAAGAGGAAGCTAATAGGAATCCGGAGTTGCAGAAGTCGGTTAAAGA
GCTGAAGGAGAAAGCAGAGGAGCTCAAAGGTGTGAAAGAAGACCTGAAAGTTAGAACGAAGCAGACAGCTGAGAAGCTGTACAAGCATGTTGATGGCGTA
TGGACCGAGGCTGAAGCCACCGCGAAGAAGGTATGCTTGGTTATTTTAAGTGGTTATAACATGATCCTTAGTGATGCCAATGAGAATCAAGATGGGATTA
CTCCCATCATTGGTTCTAGGGATGTGATTGTATGCGACCTCACTCGAGTAAGGTTTATTCAACTTGCTATTGTTGGTAAGAACACCCTAGAAGAGCTGTC
CAGCTCCAAGGAAGATGCAGAATTTGAGGGTTGGACGATTCATAGTTCAGCATCCTTGCTTGCGCAGTCATCTTTAGGACCAGTACGTGTAATCAATTCC
TTAGGTCTTAAAATTCCCTCCCCGCACAATGTGCCTACTGACTCAATGCTGTTTCAGGTTTCCTCAAGTGTGAAGGAGAAGATTTCAGCTGCTACAGAAG
AGGTGAAAGGAACTTTCAAAATGGGGAAGCAAGAGTCCTCTGAGCCCACTGGCACGGAAGATGGTCCTGACATCAAAGAGAAGACTAACTCAGCTGGTGA
AGAAACAAGCACAAAATCTCAGGCTAATGAATCTGCAGAATCATTTTTTGGAAAGTTCAAGTCTAGAATCCCTTCTGAAAAAGTCTCTTCCGCCTTCCAA
AAGTTGAAGGAGGCAAAGGTCACTGAAATAATGAAGAAGGGCTATGCCATTGTGAAGGATGAGTTGAGTGGCAACTCAAATGCAAGAAAGCACCTTGAAT
TTACTCCTTTCAAAGGAGATATAAGTACAAAAACCGAGGTTGTTCCAATGTCAAATCCTAAACAGTCTCGGTTGAGTGAAAAGTGGGAAGCTTTCAGAAA
GAAGATGCAAGGTAATCCCGTTTTCAAGCGTTTCTCTGGTATTAGTCAACCTGTAGTGACAAAGGGTCAAGAGATTGCTGAAGACATGCGGGAGAGATGG
GAGACTAGTGACAATCCCATTGTTCACAAAATTCAGGATGCTGGTGATACCATCTTTCAAGAAACAGACACTGCATCATCTATCAAGGAAATACGTAGAC
GAGATCCAACGTTTTCTTTGCCAGATTTTGTTTCTGAGGTTCAAGAGGCCATTCGACCGGTGCTTAATGCCTATATGAAGGGAGAAACTGAAACGCTGAA
GAAGTATTGCAGTCCTGAAGTAATTTCTCGGTGCGAAGGAGAGCATAAAGCTTTCAAAAGCCATGGCATTTTCTTTGACAACAGGCTTCTTCATGTATCT
GAGGTGGAAGTCAGAGAGACCAAAATGATGGGAACATCTCCGATAATTATCGTAGCGTTCCAAACTCAGCAGATACATTGCGTAAGAGATCGCGGAGGTA
AAATAACCGAAGGAGGTGAGGATACAATTCACACAGTATACTATGCATGGGCAATGCAACAAGTAGAGCCACAAGAACTCGGAGAAGGTGCTATCTACCC
AATATGGAGGTTAAGGGAAATGCAGCAAATTGGTGTCCAGGCCCTCATCTAA
AA sequence
>Lus10022930 pacid=23159900 polypeptide=Lus10022930 locus=Lus10022930.g ID=Lus10022930.BGIv1.0 annot-version=v1.0
MAARKLVRDLLLARQPVLQQFKSPQGLATTSRLLVDNRWSSCRRFGVFNNVKEEANRNPELQKSVKELKEKAEELKGVKEDLKVRTKQTAEKLYKHVDGV
WTEAEATAKKVCLVILSGYNMILSDANENQDGITPIIGSRDVIVCDLTRVRFIQLAIVGKNTLEELSSSKEDAEFEGWTIHSSASLLAQSSLGPVRVINS
LGLKIPSPHNVPTDSMLFQVSSSVKEKISAATEEVKGTFKMGKQESSEPTGTEDGPDIKEKTNSAGEETSTKSQANESAESFFGKFKSRIPSEKVSSAFQ
KLKEAKVTEIMKKGYAIVKDELSGNSNARKHLEFTPFKGDISTKTEVVPMSNPKQSRLSEKWEAFRKKMQGNPVFKRFSGISQPVVTKGQEIAEDMRERW
ETSDNPIVHKIQDAGDTIFQETDTASSIKEIRRRDPTFSLPDFVSEVQEAIRPVLNAYMKGETETLKKYCSPEVISRCEGEHKAFKSHGIFFDNRLLHVS
EVEVRETKMMGTSPIIIVAFQTQQIHCVRDRGGKITEGGEDTIHTVYYAWAMQQVEPQELGEGAIYPIWRLREMQQIGVQALI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36070 ATTIM44-2 translocase inner membrane sub... Lus10022930
[exp]
0 1
AT3G09850 D111/G-patch domain-containing... Lus10019584
[exp]
1.4 0.8941
AT2G11000 ATMAK10 MAK10 homologue (.1.2) Lus10038121
[exp]
2.8 0.8827
AT3G14400 UBP25 ubiquitin-specific protease 25... Lus10005591
[exp]
3.9 0.8804
AT1G21650 SECA2 Preprotein translocase SecA fa... Lus10029715
[exp]
4.1 0.8322
AT2G29200 APUM1 pumilio 1 (.1) Lus10004976
[exp]
4.2 0.8829
AT5G50950 FUM2 FUMARASE 2 (.1.2.3) Lus10032296
[exp]
5.7 0.8840
AT1G30620 MURUS4, HSR8, U... UDP-D-XYLOSE 4-EPIMERASE 1, MU... Lus10003496
[exp]
7.7 0.8483
AT1G72320 APUM23 pumilio 23 (.1.2.3) Lus10022388
[exp]
8.1 0.8457
Lus10036475
[exp]
8.3 0.8272
AT1G25350 OVA9 ovule abortion 9, glutamine-tR... Lus10041433
[exp]
8.5 0.8794

Lus10022930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.