Plant FIBer expression Database

Lus10022931 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G65660 790 / 0 SMP1 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
AT4G37120 751 / 0 SMP2 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1)
AT3G45950 481 / 3e-168 Pre-mRNA splicing Prp18-interacting factor (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024887
[exp]
930 / 0 AT1G65660 895 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10028956
[exp]
901 / 0 AT1G65660 891 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10030817
[exp]
309 / 3e-92 AT1G70060 1426 / 0.0 SIN3-like 4 (.1)
Lus10007480
[exp]
169 / 8e-51 AT4G37120 170 / 6e-52 SWELLMAP 2, Pre-mRNA splicing Prp18-interacting factor (.1)
Lus10007479
[exp]
119 / 3e-32 AT1G65660 124 / 5e-35 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G048200
[exp]
832 / 0 AT1G65660 830 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
Potri.012G064100
[exp]
828 / 0 AT1G65660 801 / 0.0 SWELLMAP 1, Pre-mRNA splicing Prp18-interacting factor (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF11708 Slu7 Pre-mRNA splicing Prp18-interacting factor
Representative CDS sequence
>Lus10022931 pacid=23160005 polypeptide=Lus10022931 locus=Lus10022931.g ID=Lus10022931.BGIv1.0 annot-version=v1.0
ATGGCGACTGCTTCAGGTGCCTTCAAGTCCAGAGAGGATCATAGGAAGCAGATTGAATTGGAGGAAGCGCGTAAAGCTGGTCTTGCTCCTGCCGAAGTTG
ATGAAGATGGAAAAGAGATCAATCCTCATATTCCTCAGTATATGTCCTCAGCGCCTTGGTATCTTAATGCTGAGACGCCTAGTTTGAAACATCAAAGGAA
ATGGAAGTCGGATCCAAATTATTCAAAATCGTGGTATGATAGAGGTGCCAAAGTGTATCAAGCCGCTAAGTACAGGAAAGGCGCTTGTCAGAACTGTGGA
GCCATCACACATGATTTGAAATCTTGCATGGAGAGACCTAGGAAAATAGGGGCGAAGTGGACTAACACGCACATTGCTCCTGATGAAAAGGTCGAGACTT
TCGAGCTTGATTACGATGGTAAGCGTGATCGCTGGAATGGGTACGATGCTGCCAGCTATGCTCTTGTTGTTGAGCGGTACGAAGCTCGAGATGCCGCCAG
GAGTCGTTACGTGAAGGAGCAGCAGCTTAAGAAGCTGGAGGAGAAGAACAACGGCCAGACTGATGCGGAGGATGTTAGTGACGAGGACAATGACGAAGAT
GATCTGAGGGTGGATGAAGCAAAGGTCGATGAATCAAAGCAAATGGACTTCGCTAAGGTCGAGAAGCGTGTCAGGACAACTGGCGGTGGTAGCACTGGAA
CGGTCAGGAACTTGCGTATTCGGGAAGATACAGCAAAGTATCTCTTGAATCTTGATGTCAATTCCGCTTACTATGATCCGAAAACACGTTCCATGCGTGA
GGACCCTCTCCCAGATGCAGATCCTAACGAGAAGTTCTATTTGGGAGACAATCAGTACAGAAATAGTGGTCAAGCTGAGGAGTTCAAGCAGCTTAATGTC
CATGCTTGGGAAGCTTTTGATAAGGGTCAAGATATTCACATGCAAGCTGCTCCTTCTCAAGCAGAGTTGCTGTATAAGAATTTTAAGGTGATAAAGGAGA
AACTCGAGACCCAGACAAAGGATCAAATGCTTGAGAAGTATGGGAATGCTGCCAGCCTAGACCCGATTCCGAAAGAACTTTTGCTTGGTCAGAGTGAACG
TCAAGTCGAGTATGATCGTGCTGGAAGACTTATCAAGGGACAGGAAGTTGCGCTTCCGAAAAGCAAGTACGAAGAAGACATCTACATCAACAACCACACA
AGTGTATGGGGGTCATGGTGGAAGGATCATCAGTGGGGATACAAATGCTGTAGGCAGAGCGTTCGAAACAGTTACTGTACCGGTGCAGCCGGAATCAAGG
CGGCCGAGGCTGCAACGGATCTGATGAAGGCAAATATCGCGCGGAAAGAAGCTGACGATGATGAGGTTCCAGAACCTGTAGAGGAGAAGAGGCTCGCTAC
TTGGGGTTCGGAGGTGCCGGATGATCTGGTGTTGGATGAGAAGCTGCTAGCCGAGTCGCTGAAGAAGGAAGACCAGAGGAAGAAAGAAGAGAAGGACGAG
AGGAAACGGAAATATAATGTGAAGTGGAATGATCAGGTTACTGTTGAGGATATGGAGGCGTATCGTATGAAGAAAGTTCATCATGATGATCCAATGAAGG
ATTTCCTTAACTGA
AA sequence
>Lus10022931 pacid=23160005 polypeptide=Lus10022931 locus=Lus10022931.g ID=Lus10022931.BGIv1.0 annot-version=v1.0
MATASGAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNAETPSLKHQRKWKSDPNYSKSWYDRGAKVYQAAKYRKGACQNCG
AITHDLKSCMERPRKIGAKWTNTHIAPDEKVETFELDYDGKRDRWNGYDAASYALVVERYEARDAARSRYVKEQQLKKLEEKNNGQTDAEDVSDEDNDED
DLRVDEAKVDESKQMDFAKVEKRVRTTGGGSTGTVRNLRIREDTAKYLLNLDVNSAYYDPKTRSMREDPLPDADPNEKFYLGDNQYRNSGQAEEFKQLNV
HAWEAFDKGQDIHMQAAPSQAELLYKNFKVIKEKLETQTKDQMLEKYGNAASLDPIPKELLLGQSERQVEYDRAGRLIKGQEVALPKSKYEEDIYINNHT
SVWGSWWKDHQWGYKCCRQSVRNSYCTGAAGIKAAEAATDLMKANIARKEADDDEVPEPVEEKRLATWGSEVPDDLVLDEKLLAESLKKEDQRKKEEKDE
RKRKYNVKWNDQVTVEDMEAYRMKKVHHDDPMKDFLN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Lus10022931
[exp]
0 1
AT5G48160 OBE2 OBERON2, Protein of unknown fu... Lus10012327
[exp]
2.2 0.9111
AT3G56680 Single-stranded nucleic acid b... Lus10038997
[exp]
4.7 0.9254
AT3G56680 Single-stranded nucleic acid b... Lus10027292
[exp]
5.0 0.9255
AT1G17370 UBP1B oligouridylate binding protein... Lus10011924
[exp]
7.9 0.9021
AT3G22430 unknown protein Lus10041203
[exp]
8.7 0.8880
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Lus10018843
[exp]
10.1 0.9197
AT3G14160 2-oxoglutarate-dependent dioxy... Lus10033471
[exp]
11.6 0.8949
AT1G28560 SRD2 SHOOT REDIFFERENTIATION DEFECT... Lus10017968
[exp]
16.4 0.9070
AT1G48300 unknown protein Lus10038034
[exp]
17.3 0.9192
AT5G48150 GRAS PAT1 phytochrome a signal transduct... Lus10016596
[exp]
22.0 0.8893

Lus10022931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.