Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31200 255 / 7e-89 ADF6, ATADF6 actin depolymerizing factor 6 (.1) AT5G59890 197 / 4e-66 ADF4, ATADF4 actin depolymerizing factor 4 (.1.2) AT1G01750 195 / 2e-65 ADF11 actin depolymerizing factor 11 (.1) AT3G46010 196 / 3e-65 ATADF1, ADF1 actin depolymerizing factor 1 (.1.2) AT4G00680 190 / 3e-63 ADF8 actin depolymerizing factor 8 (.1) AT2G16700 189 / 8e-63 ADF5, ATADF5 actin depolymerizing factor 5 (.1.2) AT4G34970 187 / 5e-62 ADF9 actin depolymerizing factor 9 (.1) AT4G25590 184 / 1e-60 ADF7 actin depolymerizing factor 7 (.1) AT5G59880 182 / 3e-60 ADF3 actin depolymerizing factor 3 (.1.2) AT3G46000 181 / 8e-60 ADF2 actin depolymerizing factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024885 [exp] 274 / 1e-96 AT2G31200 230 / 3e-79 actin depolymerizing factor 6 (.1) Lus10024418 [exp] 195 / 3e-65 AT5G59890 249 / 6e-87 actin depolymerizing factor 4 (.1.2) Lus10024417 [exp] 193 / 3e-64 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025319 [exp] 193 / 3e-64 AT3G46010 250 / 3e-87 actin depolymerizing factor 1 (.1.2) Lus10025049 [exp] 189 / 1e-62 AT2G16700 232 / 9e-80 actin depolymerizing factor 5 (.1.2) Lus10008489 [exp] 188 / 2e-62 AT1G01750 192 / 2e-64 actin depolymerizing factor 11 (.1) Lus10040307 [exp] 183 / 4e-58 AT5G59890 243 / 2e-81 actin depolymerizing factor 4 (.1.2) Lus10023428 [exp] 184 / 8e-58 AT5G59890 244 / 4e-81 actin depolymerizing factor 4 (.1.2) Lus10034494 [exp] 176 / 8e-58 AT4G34970 202 / 2e-68 actin depolymerizing factor 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G223800 [exp] 254 / 1e-88 AT2G31200 225 / 5e-77 actin depolymerizing factor 6 (.1) Potri.002G038800 [exp] 250 / 6e-87 AT2G31200 241 / 2e-83 actin depolymerizing factor 6 (.1) Potri.008G052100 [exp] 197 / 3e-66 AT5G59890 249 / 1e-86 actin depolymerizing factor 4 (.1.2) Potri.004G173800 [exp] 197 / 4e-66 AT2G16700 255 / 4e-89 actin depolymerizing factor 5 (.1.2) Potri.009G133100 [exp] 197 / 8e-66 AT2G16700 257 / 7e-90 actin depolymerizing factor 5 (.1.2) Potri.001G236700 [exp] 196 / 1e-65 AT5G59890 256 / 2e-89 actin depolymerizing factor 4 (.1.2) Potri.009G028200 [exp] 193 / 2e-64 AT5G59890 258 / 4e-90 actin depolymerizing factor 4 (.1.2) Potri.001G236400 [exp] 192 / 3e-64 AT5G59890 246 / 1e-85 actin depolymerizing factor 4 (.1.2) Potri.009G028100 [exp] 192 / 3e-64 AT5G59890 256 / 1e-89 actin depolymerizing factor 4 (.1.2) Potri.001G106200 [exp] 190 / 2e-63 AT4G00680 234 / 6e-81 actin depolymerizing factor 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0092 [flax] [poplar] ADF PF00241 [flax] [poplar] Cofilin_ADF Cofilin/tropomyosin-type actin-binding protein
Representative CDS sequence Show only first row Show all	>Lus10022933 pacid=23159996 polypeptide=Lus10022933 locus=Lus10022933.g ID=Lus10022933.BGIv1.0 annot-version=v1.0 ATGTCTTTCAGAGGACTCGCTCGGCCAAACGCCACCTCCGGGATGGGAGTCGCGGAGCAGAGCCTCCAAACATTCACGGAGCTGCAGAGGAAGAAGGTCC ACCGTTACGTAGTCTTCAAGATCGACGAGAAGAAGAAACAGGTCATCGTCGAGAAAACCGGCGCTCCTGCTGAGAGCTACGAAGACTTCACCGCTTCCTT ACCTGACAACGACTGCCGATACGCCATCTACGACTACGACTTCGTCACCCCCGACAACTGCCAGAAGAGCAAGATCTTCTTCTTCGCCTGGTCACCATCG AGCTCCAGAATCAGGGCGAAAATGCTGTACGCGACGTCCAAGGATAGGTTCAGGAGGGAGCTTGACGGGATTCACTACGAGATCCAGGCTACCGATCCTA CTGAACTGGATCTGGAGGTTCTTCAGGAACGTGCTAATTGA
AA sequence Show only first row Show all	>Lus10022933 pacid=23159996 polypeptide=Lus10022933 locus=Lus10022933.g ID=Lus10022933.BGIv1.0 annot-version=v1.0 MSFRGLARPNATSGMGVAEQSLQTFTELQRKKVHRYVVFKIDEKKKQVIVEKTGAPAESYEDFTASLPDNDCRYAIYDYDFVTPDNCQKSKIFFFAWSPS SSRIRAKMLYATSKDRFRRELDGIHYEIQATDPTELDLEVLQERAN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Lus10022933 [exp]	0	1
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	1.0	0.8994
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10028700 [exp]	2.4	0.8813
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040127 [exp]	3.5	0.8717
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040783 [exp]	5.5	0.8606
AT5G44060			unknown protein		Lus10011797 [exp]	5.5	0.8597
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10025397 [exp]	8.8	0.8580
AT1G73500		ATMKK9	MAP kinase kinase 9 (.1)		Lus10040128 [exp]	8.9	0.8525
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10011053 [exp]	9.0	0.8212
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	10.1	0.8772
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	10.2	0.8538

Compare expression of checked genes

Lus10022933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.