Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32420 53 / 1e-07 F-box and associated interaction domains-containing protein (.1) AT1G52490 53 / 1e-07 unknown protein AT4G38870 50 / 1e-06 F-box and associated interaction domains-containing protein (.1) AT2G02030 50 / 1e-06 F-box family protein (.1) AT4G19940 49 / 2e-06 F-box and associated interaction domains-containing protein (.1) AT5G62660 47 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT4G19930 46 / 2e-05 F-box and associated interaction domains-containing protein (.1) AT3G52320 45 / 6e-05 F-box and associated interaction domains-containing protein (.1) AT2G40925 44 / 9e-05 F-box and associated interaction domains-containing protein (.1) AT1G47730 43 / 0.0002 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022939 [exp] 668 / 0 AT1G52490 56 / 2e-08 unknown protein Lus10011210 [exp] 317 / 3e-105 AT1G32420 87 / 7e-19 F-box and associated interaction domains-containing protein (.1) Lus10013934 [exp] 297 / 8e-98 AT1G11270 72 / 7e-14 F-box and associated interaction domains-containing protein (.1.2.3) Lus10016866 [exp] 284 / 2e-90 AT1G32420 84 / 2e-17 F-box and associated interaction domains-containing protein (.1) Lus10011190 [exp] 275 / 5e-88 AT1G32420 78 / 1e-15 F-box and associated interaction domains-containing protein (.1) Lus10018460 [exp] 268 / 3e-87 AT1G32420 66 / 9e-12 F-box and associated interaction domains-containing protein (.1) Lus10011197 [exp] 255 / 2e-80 AT1G47790 86 / 6e-18 F-box and associated interaction domains-containing protein (.1) Lus10007277 [exp] 237 / 1e-74 AT3G04660 82 / 6e-17 F-box and associated interaction domains-containing protein (.1) Lus10007285 [exp] 236 / 3e-74 AT3G04660 82 / 7e-17 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G458400 [exp] 61 / 3e-10 AT2G31470 113 / 8e-28 DROUGHT TOLERANCE REPRESSOR, F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 47 / 1e-05 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.012G014300 [exp] 45 / 7e-05 AT3G16210 88 / 6e-19 F-box family protein (.1) Potri.008G144000 [exp] 44 / 8e-05 AT4G38870 97 / 6e-22 F-box and associated interaction domains-containing protein (.1) Potri.017G058000 [exp] 44 / 0.0001 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.007G074084 [exp] 44 / 0.0001 AT1G11270 83 / 1e-17 F-box and associated interaction domains-containing protein (.1.2.3) Potri.019G062900 [exp] 44 / 0.0001 AT1G50870 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) Potri.014G162600 [exp] 44 / 0.0002 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.015G013800 [exp] 43 / 0.0002 AT4G12560 105 / 7e-25 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 43 / 0.0002 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022937 pacid=23159893 polypeptide=Lus10022937 locus=Lus10022937.g ID=Lus10022937.BGIv1.0 annot-version=v1.0 ATGAGTGGTTGTTTTGATTTCTTGTTAGCCGATATGGACTGTGGCGGAGCCACTATTCAGAACTCATGGAGTGTGAAAGTGCCGAGTCCAGATACTCAAA TTAGGGGACCAGTTAGGGGATTGCTCTGTTTTGTTGACGACTTTGATGTATCGATTTACAACGTCAGCACCAGACAATTTGTCACACCATGGATCAGATC GACGGTGGTCTCGAGGACTCGTCGAATGGACAAACCGGCATGTCAATTTGGATTCGACCCCGATACCGGAGAATATAAAGCTATTTTTGTTTGGCAAGCT TCATGTAAAACTCCGGCTTGTTGTGAGGTGTTGACTGTAGGGGTTGACTCTAGTTGGAGAATAATTGATGCTGCAGTACCTCCTGGATTTGAATTCATTA AGAGTGCTTATGTCAATGGTTCCATCTACTGGATGACCCACTACTGGGGCGGACGACGAAGTATTAATACGTATTCCGAATCCTTGGTGGCATTTGAAAT TGGACCGGAGAAGTTTAGGACGATGAGGATTCCCGAATTCACACTTTCAGGGTGTCAACTGTCCCCCCATGACATTATAATAGAATTGGATGGGTGTCCA ACTGTGTTGCGTAGGGCAAGACCGCCAACACTGAAGCTATGGAAATTTCGTTATAGTAATGAGGAGGAAGGAACACCTACTACTGCTACAACTACAAGTG AAACAGAAGATTGGAATGAAGTTTGTATTGAAATGCCTAGTGATGTATCTCCCTGGATGTCTGTTTCGGTTCATCCGATACCTGGGAAAGACGAGATGAT CTTTGAAACCCATGATCGACGGAATGTTCACTGCAAGGAAATTCTACTGAGAAATGTGAAGCTTGCCAGCTTTTATTCATACAATAGGGTAAACAAGACT TTCAGCAAGTTTAAAATCCAAGGAATTCCCTCCATTCCAGATCTTCTTAGCACTCGTTGTCATGTGTTGGTAGAAGATCTTTTTCCTGCTGCTGCTGGTG AGAAAAAACCAGTGAAGAAGCCCAGTTGA
AA sequence Show only first row Show all	>Lus10022937 pacid=23159893 polypeptide=Lus10022937 locus=Lus10022937.g ID=Lus10022937.BGIv1.0 annot-version=v1.0 MSGCFDFLLADMDCGGATIQNSWSVKVPSPDTQIRGPVRGLLCFVDDFDVSIYNVSTRQFVTPWIRSTVVSRTRRMDKPACQFGFDPDTGEYKAIFVWQA SCKTPACCEVLTVGVDSSWRIIDAAVPPGFEFIKSAYVNGSIYWMTHYWGGRRSINTYSESLVAFEIGPEKFRTMRIPEFTLSGCQLSPHDIIIELDGCP TVLRRARPPTLKLWKFRYSNEEEGTPTTATTTSETEDWNEVCIEMPSDVSPWMSVSVHPIPGKDEMIFETHDRRNVHCKEILLRNVKLASFYSYNRVNKT FSKFKIQGIPSIPDLLSTRCHVLVEDLFPAAAGEKKPVKKPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52490			unknown protein		Lus10022937 [exp]	0	1
AT1G52490			unknown protein		Lus10022939 [exp]	1.0	0.9597
AT1G60410			F-box family protein (.1)		Lus10020292 [exp]	2.0	0.8030
AT1G22440			Zinc-binding alcohol dehydroge...		Lus10005650 [exp]	2.4	0.7879
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10007003 [exp]	5.4	0.6671
AT4G17260			Lactate/malate dehydrogenase f...		Lus10006030 [exp]	6.2	0.7090
AT2G42040			unknown protein		Lus10021062 [exp]	6.7	0.7013
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Lus10017700 [exp]	7.5	0.7847
					Lus10013650 [exp]	12.2	0.7669
					Lus10022938 [exp]	12.7	0.7572
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	13.3	0.7121

Compare expression of checked genes

Lus10022937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.