Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38670 499 / 1e-176 PECT1 phosphorylethanolamine cytidylyltransferase 1 (.1) AT2G32260 111 / 2e-27 ATCCT1 phosphorylcholine cytidylyltransferase (.1) AT4G15130 108 / 2e-26 ATCCT2 phosphorylcholine cytidylyltransferase2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027604 [exp] 759 / 0 AT2G38670 546 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10017147 [exp] 658 / 0 AT2G38670 506 / 1e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10021592 [exp] 649 / 0 AT2G38670 505 / 4e-179 phosphorylethanolamine cytidylyltransferase 1 (.1) Lus10003808 [exp] 110 / 5e-27 AT2G32260 468 / 8e-167 phosphorylcholine cytidylyltransferase (.1) Lus10010471 [exp] 110 / 5e-27 AT2G32260 466 / 3e-166 phosphorylcholine cytidylyltransferase (.1) Lus10027337 [exp] 110 / 6e-27 AT2G32260 428 / 4e-151 phosphorylcholine cytidylyltransferase (.1) Lus10036229 [exp] 107 / 2e-26 AT2G32260 400 / 3e-141 phosphorylcholine cytidylyltransferase (.1) Lus10038368 [exp] 106 / 7e-26 AT2G32260 398 / 2e-140 phosphorylcholine cytidylyltransferase (.1) Lus10039039 [exp] 74 / 6e-15 AT2G32260 248 / 5e-82 phosphorylcholine cytidylyltransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G132700 [exp] 642 / 0 AT2G38670 510 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G071000 [exp] 640 / 0 AT2G38670 521 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.016G143600 [exp] 481 / 3e-169 AT2G38670 682 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.006G113900 [exp] 472 / 8e-166 AT2G38670 668 / 0.0 phosphorylethanolamine cytidylyltransferase 1 (.1) Potri.001G159400 [exp] 115 / 5e-29 AT2G32260 418 / 4e-148 phosphorylcholine cytidylyltransferase (.1) Potri.003G075000 [exp] 114 / 1e-28 AT2G32260 417 / 1e-147 phosphorylcholine cytidylyltransferase (.1) Potri.016G017500 [exp] 108 / 3e-26 AT2G32260 421 / 2e-148 phosphorylcholine cytidylyltransferase (.1) Potri.006G006700 [exp] 107 / 6e-26 AT2G32260 443 / 1e-157 phosphorylcholine cytidylyltransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF01467 [flax] [poplar] CTP_transf_like Cytidylyltransferase-like
Representative CDS sequence Show only first row Show all	>Lus10022942 pacid=23146170 polypeptide=Lus10022942 locus=Lus10022942.g ID=Lus10022942.BGIv1.0 annot-version=v1.0 ATGGATTACGGAAGCAGTAATTGGATCTGGGATGGGGTTTACTGCCACCCGCATCTGTTCGGTGGTTTAATGCTCACCGCTAGCTTGCTAGGTTTGTCGA CCAGCTATTTCAGCGGAATTGGACTCTCTTTTTTCCCCTACATGTTCACCGATCTCGGTAAGAAGAGGCCCGAGAAGAAGAAGAAGGTTCGGGTCTACAT GGATGGTTGCTTTGATCTCATGCATTTTGGTCATGCCAATGCCTTGAGGCAAGCTAAGGCTTTGGGGGATGAGTTGGTGGTTGGAGTTGTCAGCGATGAG GAGATCATTCTCAATAAGGGCCCCCCTGTTTTGCCCATGGAGGAGAGGTTGGCACTTGTGAGCGGATTGAAGTGGGTTGATGAAGTCATTGCTGATGCTC CATATGCTATTACGGAGCAGTTCATGAAGAGTCTCTTCAATGAGCATAGGATTGACTATATCATACATGGTGACGATCCTTGCCTCCTTCCGGATGGAAC CGATGCGTATGCCTTAGCCAAGAAAGCTGGCCGTTACAAGCAAATTAAACGAACTGAAGGCGTTTCCAGCACTGATATCGTTGGAAGAATACTTTGCACT GCAAAGGATGACGATGTTGAAGACCACCGTTTATCGTCTTCACCTGGTGATAAAGGAATTCAATCTCATAGTTCCCATTTATCTCAATTTCTACCAACCT CTAGACGGATAGTGCAATTTTCAAATGGCAAGGCACCTGGACCTAATGCCCGTGTTGTCTACATTGATGGAGCATTTGACTTGTTCCATGCAGGGCATGT CGAGATTCTAAGAAAAGCTAGGCAGCTTGGTGACTTTCTACTAGTTGGGATCCATATGGATCATATCGTTAGGGAACACAGAGGGAAATGCTATCCAATC ATGCAGTTGCATGAACGTAGTCTTAGTGTGCTAGCATGCCACTATGTTGATGAAGTCATCATTGGTGCACCCTGGGAAGTTTCCAAGGATGTGATTACAA CGTTCAACATATCAGTGGTTGTGCGTGGGACTGTTGCAGAGCAAAACTCATTAGCAACTGGAGAAAGTGATCCTTATGAATTCCCAAAGGCCATGGGGAT CTTCAGGACTCTGGACAGCCCTAAAGATGTAACAACCACATCAGTGATGAAACGAATCATTGCTAACCACAAGGCCTTCAAAAAACGAAATGCAAAGAAG AGTCAGAGTGAGAAGAAATACTACGAGGAGAAGGTGTATGTTTCTGGAGACTAA
AA sequence Show only first row Show all	>Lus10022942 pacid=23146170 polypeptide=Lus10022942 locus=Lus10022942.g ID=Lus10022942.BGIv1.0 annot-version=v1.0 MDYGSSNWIWDGVYCHPHLFGGLMLTASLLGLSTSYFSGIGLSFFPYMFTDLGKKRPEKKKKVRVYMDGCFDLMHFGHANALRQAKALGDELVVGVVSDE EIILNKGPPVLPMEERLALVSGLKWVDEVIADAPYAITEQFMKSLFNEHRIDYIIHGDDPCLLPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRILCT AKDDDVEDHRLSSSPGDKGIQSHSSHLSQFLPTSRRIVQFSNGKAPGPNARVVYIDGAFDLFHAGHVEILRKARQLGDFLLVGIHMDHIVREHRGKCYPI MQLHERSLSVLACHYVDEVIIGAPWEVSKDVITTFNISVVVRGTVAEQNSLATGESDPYEFPKAMGIFRTLDSPKDVTTTSVMKRIIANHKAFKKRNAKK SQSEKKYYEEKVYVSGD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10022942 [exp]	0	1
AT3G52030			F-box family protein with WD40...		Lus10005328 [exp]	3.2	0.7942
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	6.2	0.7870
AT1G04140			Transducin family protein / WD...		Lus10000495 [exp]	7.1	0.7881
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	7.7	0.7706
AT3G23950			F-box family protein (.1)		Lus10013987 [exp]	8.1	0.7373
AT2G38670		PECT1	phosphorylethanolamine cytidyl...		Lus10017147 [exp]	12.5	0.7426
AT5G13980			Glycosyl hydrolase family 38 p...		Lus10041516 [exp]	19.2	0.7201
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	23.7	0.7536
AT3G29010			Biotin/lipoate A/B protein lig...		Lus10017321 [exp]	25.0	0.7495
AT1G71800		CSTF64	cleavage stimulating factor 64...		Lus10017923 [exp]	38.3	0.7583

Compare expression of checked genes

Lus10022942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.