Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19220 509 / 5e-163 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT5G20730 486 / 8e-154 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) AT1G30330 409 / 4e-127 ARF ARF6 auxin response factor 6 (.1.2) AT5G37020 400 / 2e-125 ARF ARF8, ATARF8 auxin response factor 8 (.1.2) AT1G19850 388 / 2e-119 ARF IAA24, ARF5, MP MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) AT5G62000 307 / 6e-90 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 294 / 4e-87 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT5G60450 286 / 5e-83 ARF ARF4 auxin response factor 4 (.1) AT4G23980 274 / 5e-80 ARF ARF9 auxin response factor 9 (.1.2) AT2G33860 269 / 2e-78 ARF ARF3, ETT ETTIN, AUXIN RESPONSE TRANSCRIPTION FACTOR 3, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027600 [exp] 1598 / 0 AT1G19220 670 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10033635 [exp] 503 / 5e-164 AT5G20730 741 / 0.0 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3) Lus10033598 [exp] 407 / 1e-127 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 406 / 2e-126 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10031354 [exp] 403 / 5e-126 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10010969 [exp] 402 / 8e-126 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10017641 [exp] 407 / 3e-125 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2) Lus10007386 [exp] 398 / 6e-124 AT5G37020 1021 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 392 / 3e-123 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G145800 [exp] 1152 / 0 AT1G19220 665 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G077800 [exp] 1086 / 0 AT1G19220 664 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.006G138500 [exp] 522 / 2e-167 AT1G19220 734 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.018G063000 [exp] 493 / 6e-157 AT1G19220 735 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Potri.004G078200 [exp] 413 / 1e-129 AT5G37020 1057 / 0.0 auxin response factor 8 (.1.2) Potri.005G236700 [exp] 413 / 2e-128 AT1G19850 1060 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Potri.011G091900 [exp] 409 / 2e-127 AT1G30330 830 / 0.0 auxin response factor 6 (.1.2) Potri.017G141000 [exp] 406 / 3e-127 AT5G37020 1048 / 0.0 auxin response factor 8 (.1.2) Potri.001G358500 [exp] 408 / 6e-127 AT1G30330 818 / 0.0 auxin response factor 6 (.1.2) Potri.002G055000 [exp] 407 / 3e-126 AT1G30330 775 / 0.0 auxin response factor 6 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10022943 pacid=23146118 polypeptide=Lus10022943 locus=Lus10022943.g ID=Lus10022943.BGIv1.0 annot-version=v1.0 ATGGGTGGAGGAATGGAGGCAAACAAGAACAAGTTCATCGAGGACTGGGGCGCCGCCCGGGAGAATCTGGAGCACAACTTCCGATGGACTCGTCGTAACT TCGCCCTTATTGGCTTGTTCGGCGTCGCCCTTCCATTCCTCGTTTACAAGGGCACCGTCAAGGAATTCGCTGACCCGGAAACAGATGAAGTATATGCTCA GATGACCCTCCAACCGGTCCCTTCTTATGACAAGGAAGCATTACTGAGATCAGACCTCACATTTAGGTCAAGTAAGCCACAGCCAGAGTTCTTCTGCAAA ACATTAACAGCAAGTGACACTAGCACTCATGGAGGCTTTTCTGTTCCTCGTCGAGCAGCTGAGAAGATTTTCCCTCCCCTTGATTTCTCCATGCAACCGC CTGCTCAAGAACTTGTTGCCAGGGATCTACATGATAATGTTTGGACTTTCAGACATATCTACCGTGGACAGCCAAAGCGTCACTTACTCACAACAGGCTG GAGCCTTTTTGTAAGTGGGAAAAGGCTTATTGCAGGCGACTCAGTCTTGTTCATTAGAGATGAGAAGCAGCAGCTTCTCTTGGGCATCAGACGGGCTAAT CGGCAGCCTACCAATTTGTCTTCATCAGTTTTATCAAGTGATAGCATGCACATAGGCATCCTTGCTGCTGCAGCACATGCCGCAGCTAACAATAGCCCCT TTACTGTGTTCTTCAACCCAAGGGCTAGCCCGTCAGAATTTGTTGTTCCATTAGCCAAATACTACAAAGCTGTCTACAGCAACCAAGTATCACTCGGTAT GCGCTTCCGGATGATGTTTGAGACTGAGGAGTCAGGAACAAGAAGGTATATGGGTACGATTACTGGGATTACTGATCTTGATCCTGTGAGATGGAAGGGT TCACAATGGCGTAACTTACAGGTTGGATGGGACGAATCAACTGTAGAGGAAAGGCGGAATCGTGTTTCGGTTTGGGAGATTGAACCAGTGACTGCTCCAT TTTTCATATGCCCCCCTCCTTTCTTTATATCTAAGCGTCCAAGACAACCAGGGATGCCAGATGATGACTCTTCTGATTTAGATGGAATGTTAAAGAGGAG TATGCCGTGGCTTGGCGATGATATCTTGAAGGATCCTGGGAGCCTCCCTGGATTAAGCTTAGTTCAATGGATGAACATGCAACAAACCTCATCACTGGCT AACACAGTGCAGCAAACTTACATGCAATCTTTGCCAGGATCTGGTCTTCCAAATCTCGCTGGTACAGCTGACATTTCCCGCCAGCTAGGCGGCTTGTCAG CACCTCAAGTTCTTCAACAAAACAACTTTCAGTTGACTGCTCCACGGCTACCTCAGCAAGCTCCACAGCTTGATCAGTTCATCAAAATGCCGTCCTTGAT GAACCCAATGGCATCAGTCGTCCAAGTGCCTGATGTTGTTCAACAGCCAAGACAAAATTTGATGAACCAAACTCCATCTACAAGTCAAGTTCAAGCCAGT AGCATTGTACAGCATCAGCAACCTAATCAAAGTAATCAGTTTGTTAGAAACCTTTCTCCTAGCCTACAGCAGCAGCATAGTGAAATGCAAAACTTCGTGC CAACCCAGATACCAGATCAACTTAATCAGCATTTTCAAGGATCGGATAATCAGCTTCAAATTCAGCTGTTGCAGAAGCTTCAGCAGCAGCAGCAGCAGTC ACTGTTAGCTCAGCAGGCCGGGGGGCAACTTCCTCACCTACAAGATCCACAAAGGCAACAATTAGATGCATCGCAAAGCTTCTCCAGGTCCGTGACACCC AACCAAATGCCTCAAACAGTGACCTCCTCACTCCCACAGTCGAATATCGTTCAGCAACAGATTGCCAAGGGCAACAACCACCAAGTTGATGTCAGATTTT CTCATCTGCCACAACAAAGTCAGAAACTTCAACACCAACAAACTAGCTTACTACCAGAAGTCCCCGGGCATATCAGAGTACCTCCTTGCACAACAAGTAA TCAGCTTTCAACAGGCATGTTGAATGCAAGAGCAGTGACTGACGAAGTGCCATCTTGCTCTACTTCACCTTCAACAAACAACTGCTCGAATCTGATTCAA CCAATGATGAATGACATTTATCCATCTACTGGCACACTCTTGAGTCCTGGTGCACTGGACACAATGCCCTATGCTGGGGGCATGTTTAAAAACATGCAAC AGAAATCGGATGTTAAGCCATCCCTTAACATCTCCAAGAATCAAAACCAGGGATTTTTTGGTGTGAAAGGACCAACTGCCCAAACTGATTATTTGGACAC TTCATCTTCTACATCAGTATGTCTTTCCCAGAATGATGTACAGTTGCAGCAAAATAACAACGTATCGTATAATTCGCAACCTATACTGATGAGAGGAGAA ACTAGCCAAGATGAAGAACTCCAAGCGGATCCCAGGAGTAATGGTGTATATGGAACCGGTATTGACGGCCAAAACCAATTGGGGATACACATGCATTCTG ATGATTTGTTGACGAAGTCCATGGTAGGAGTACTGGGGAAAGATTTCTCAAACAACCTTCCTTCCGGGGAGATGCTTGCTAACTGTGCCAATTCAAACTC GAAAGAGCCTCAGCAAGAACTCTCGTCATCGATTGTGTCTCAGTCATTTGGAGTTCCCGATATGGCTTTCAACTCCATTGACTCAATTAATGATAGCAGC TTCTTGAACAGAAGCTCCTGGGGCGCTCAACCGCAGTTTCAGCGAATGAGGACTTATACTAAGGTGTATAAACGTGGAGCTGTGGGGAGGTCGATTGATA TAACCCGTTATTCAGGTTATGACGAGCTTAAGCAAGATCTAGCTCGTCGGTTTGGCATAGAGGGTCAGCTGGAAGATCGAGGGAGAGTAGGCTGGAAACT TGTTTATGTCGATCATGAGAATGATGTGTTGCTAGTAGGGGATGATCCTTGGGAAGAATTTGTGAACTGCGTGCGGTGCATCAAGATACTGTCGCCCCAA GAAGTGCAGCAGATGAGTTTGGATGGAGATTTTGGCAACTCTGTGCTTCCAAAGCAAGCCTGTAGCAGCTCAGATAATGGCAATGCATGA
AA sequence Show only first row Show all	>Lus10022943 pacid=23146118 polypeptide=Lus10022943 locus=Lus10022943.g ID=Lus10022943.BGIv1.0 annot-version=v1.0 MGGGMEANKNKFIEDWGAARENLEHNFRWTRRNFALIGLFGVALPFLVYKGTVKEFADPETDEVYAQMTLQPVPSYDKEALLRSDLTFRSSKPQPEFFCK TLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLIAGDSVLFIRDEKQQLLLGIRRAN RQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFFNPRASPSEFVVPLAKYYKAVYSNQVSLGMRFRMMFETEESGTRRYMGTITGITDLDPVRWKG SQWRNLQVGWDESTVEERRNRVSVWEIEPVTAPFFICPPPFFISKRPRQPGMPDDDSSDLDGMLKRSMPWLGDDILKDPGSLPGLSLVQWMNMQQTSSLA NTVQQTYMQSLPGSGLPNLAGTADISRQLGGLSAPQVLQQNNFQLTAPRLPQQAPQLDQFIKMPSLMNPMASVVQVPDVVQQPRQNLMNQTPSTSQVQAS SIVQHQQPNQSNQFVRNLSPSLQQQHSEMQNFVPTQIPDQLNQHFQGSDNQLQIQLLQKLQQQQQQSLLAQQAGGQLPHLQDPQRQQLDASQSFSRSVTP NQMPQTVTSSLPQSNIVQQQIAKGNNHQVDVRFSHLPQQSQKLQHQQTSLLPEVPGHIRVPPCTTSNQLSTGMLNARAVTDEVPSCSTSPSTNNCSNLIQ PMMNDIYPSTGTLLSPGALDTMPYAGGMFKNMQQKSDVKPSLNISKNQNQGFFGVKGPTAQTDYLDTSSSTSVCLSQNDVQLQQNNNVSYNSQPILMRGE TSQDEELQADPRSNGVYGTGIDGQNQLGIHMHSDDLLTKSMVGVLGKDFSNNLPSGEMLANCANSNSKEPQQELSSSIVSQSFGVPDMAFNSIDSINDSS FLNRSSWGAQPQFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRGRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQ EVQQMSLDGDFGNSVLPKQACSSSDNGNA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10022943 [exp]	0	1
AT2G43400		ETFQO	electron-transfer flavoprotein...		Lus10025584 [exp]	3.6	0.8023
AT1G59650		CW14	Protein of unknown function (D...		Lus10005831 [exp]	4.5	0.7408
AT5G47040		LON2	lon protease 2 (.1)		Lus10003009 [exp]	5.8	0.7682
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Lus10015215 [exp]	10.7	0.6450
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10005035 [exp]	12.6	0.7027
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Lus10030224 [exp]	14.4	0.7280
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10035014 [exp]	17.0	0.7531
AT3G12685			Acid phosphatase/vanadium-depe...		Lus10001842 [exp]	17.1	0.6850
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	17.9	0.7313
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	20.5	0.7068

Compare expression of checked genes

Lus10022943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.