Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06990 707 / 0 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 493 / 6e-166 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 318 / 4e-97 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G70070 205 / 2e-57 ISE2, EMB25, PDE317 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) AT4G32700 81 / 7e-16 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) AT2G42270 64 / 1e-10 U5 small nuclear ribonucleoprotein helicase (.1) AT5G61140 64 / 2e-10 U5 small nuclear ribonucleoprotein helicase (.1.2) AT1G20960 63 / 3e-10 EMB1507 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) AT3G27730 51 / 1e-06 MER3, RCK ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027599 [exp] 889 / 0 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 440 / 9e-145 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 422 / 2e-138 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 317 / 1e-96 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10013294 [exp] 203 / 1e-56 AT1G70070 1372 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10030818 [exp] 158 / 3e-41 AT1G70070 1389 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Lus10022115 [exp] 89 / 2e-18 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10016048 [exp] 62 / 5e-10 AT1G20960 3558 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10025168 [exp] 62 / 1e-09 AT1G20960 3286 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146001 [exp] 769 / 0 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.006G078000 [exp] 751 / 0 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 488 / 1e-163 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 307 / 5e-93 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.010G038500 [exp] 205 / 2e-57 AT1G70070 1502 / 0.0 PIGMENT DEFECTIVE 317, INCREASED SIZE EXCLUSION LIMIT 2, EMBRYO DEFECTIVE 25, DEAD/DEAH box helicase, putative (.1) Potri.018G036600 [exp] 81 / 6e-16 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Potri.015G056501 [exp] 69 / 4e-12 AT5G61140 3496 / 0.0 U5 small nuclear ribonucleoprotein helicase (.1.2) Potri.012G097300 [exp] 67 / 2e-11 AT1G20960 3440 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.015G095500 [exp] 63 / 3e-10 AT1G20960 3326 / 0.0 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Potri.001G348200 [exp] 50 / 3e-06 AT3G27730 1542 / 0.0 ROCK-N-ROLLERS, ATP binding;ATP-dependent helicases;DNA helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10022944 pacid=23146146 polypeptide=Lus10022944 locus=Lus10022944.g ID=Lus10022944.BGIv1.0 annot-version=v1.0 ATGGAGGAGCAATCAGTAGCCTCACCTAGAAAGCGGAAGACGCCGGAGGAGGGCGAAATGGTGGATACACATCGGCAGGAATCTGCACCGAAGCGCCAAA ATGCTACGCGCACTTGCGTGCATGAGGTTGCAGTGCCCAGTGATTATACTTCGCTTAAAGATGGAACTGAATACGGGTCTCTTTCTAATCCTGTGTACAC TGGTGAGATGGCTAAAGCATACAAATTTGAACTTGATCCTTTTCAGAAGGTATCAATTGCCTGTTTGGAACGAAAAGAGTCTGTTCTTGTTTCTGCACAT ACTTCTGCTGGGAAAACTGCAGTGGCTGAGTATGCAATTGCTATGGGCTTCAGAGATAAGCAGAGGGTTATATATACTTCTCCACTGAAAGCTTTGAGTA ACCAAAAGTATAGGGAGCTCCAGCATGAGTTTCAAGATGTTGGATTGATGACGGGTGATGTCACGCTGTCTCCCAATGCTAGTTGTCTGGTGATGACAAC AGAGATTCTTAGGGGAATGCTTTACCGCGGTTCACAAATTTTGAAGGAGGTTGCATGGGTTATTTTTGATGAGATCCATTATATGAAGGATCGTGAAAGA GGGGTTGTTTGGGAGGAGAGTATCATATTTTTGCCACCAGAGATTAAAATGGTTTTCCTTTCTGCCACAATGTCGAATGCCACAGAGTTTGCGGAGTGGA TTTGCAATGTGCACAAGCAGCCTTGTCATGTTGTGTATACTGATTTTCGGCCAACTCCTTTGCAGCATTATGTTTTCCCCATGGGTGGTTCCGGCCTATA CCTTGTTGTTGATGAGAATGAACAATTCAGAGAAGATAATTTCATGAAGCTGCAAGACACGTTTTCAAAACAGAAAATTGGTGATGGGAACAAGAGTACT AATGGTAAAGCAAGTGGTAGAATTGCAAAATCTGGAAAGGCCTCTGGAGGGTCGGACATTTTCAAAATTGTTAAGATGATTATGGAGCGGAAGTTTCAAC CTGTTATAGTTTTCAGCTTTAGTAGAAGAGAATGTGAACAGCATGCAATGTCAATGTCTAAGCTTGATTTTAATACACAAGAGGAGAAGGTTGTGGTAGA CGAAGTCTTCAATAATGCAATACAATGCTTGAATGAAGAAGATAGGAGTTTGCCAGCTATTGAATTGATGCTGCCACTACTTCAGCGTGGTATTGCTGTT CATCATTCTGGCCTTCTTCCTGTCATCAAGGAACTGGTTGAGCTTCTTTTTCAGGAAGGCCTTGTGAAGGCACTTTTTGCGACAGAGACAGTAAGTTTGA CTCTCTCAAGCAATCTTGTTGCATCGCAGCGAGGAACTGGTTTTCCTATTTGCACCCGTTTTTCCCTCTTCCCTTTTTGTTGGCCAGGAGGTTAA
AA sequence Show only first row Show all	>Lus10022944 pacid=23146146 polypeptide=Lus10022944 locus=Lus10022944.g ID=Lus10022944.BGIv1.0 annot-version=v1.0 MEEQSVASPRKRKTPEEGEMVDTHRQESAPKRQNATRTCVHEVAVPSDYTSLKDGTEYGSLSNPVYTGEMAKAYKFELDPFQKVSIACLERKESVLVSAH TSAGKTAVAEYAIAMGFRDKQRVIYTSPLKALSNQKYRELQHEFQDVGLMTGDVTLSPNASCLVMTTEILRGMLYRGSQILKEVAWVIFDEIHYMKDRER GVVWEESIIFLPPEIKMVFLSATMSNATEFAEWICNVHKQPCHVVYTDFRPTPLQHYVFPMGGSGLYLVVDENEQFREDNFMKLQDTFSKQKIGDGNKST NGKASGRIAKSGKASGGSDIFKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDFNTQEEKVVVDEVFNNAIQCLNEEDRSLPAIELMLPLLQRGIAV HHSGLLPVIKELVELLFQEGLVKALFATETVSLTLSSNLVASQRGTGFPICTRFSLFPFCWPGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022944 [exp]	0	1
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10003700 [exp]	1.4	0.9674
AT1G14850		NUP155	nucleoporin 155 (.1)		Lus10001585 [exp]	3.2	0.9627
AT5G13680		AtELP1, ELO2, A...	ELONGATA 2, ABA-OVERLY SENSITI...		Lus10023426 [exp]	4.0	0.9564
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	4.2	0.9404
AT1G06220		GFA1, CLO, MEE5	MATERNAL EFFECT EMBRYO ARREST ...		Lus10043477 [exp]	4.6	0.9620
AT3G14120			unknown protein		Lus10037684 [exp]	5.9	0.9424
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	8.4	0.9529
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10030088 [exp]	8.5	0.9494
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	9.8	0.9423
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10016792 [exp]	10.9	0.8898

Compare expression of checked genes

Lus10022944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.