Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G06990 855 / 0 HEN2 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT1G59760 370 / 1e-117 AtMTR4 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) AT3G46960 171 / 6e-45 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027599 [exp] 1063 / 0 AT2G06990 1633 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10024454 [exp] 379 / 6e-120 AT1G59760 1557 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10007442 [exp] 376 / 1e-119 AT1G59760 1523 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Lus10017528 [exp] 163 / 2e-42 AT3G46960 1971 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078000 [exp] 898 / 0 AT2G06990 1634 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.004G228700 [exp] 367 / 4e-116 AT1G59760 1581 / 0.0 homolog of yeast MTR4, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.018G146001 [exp] 183 / 8e-51 AT2G06990 972 / 0.0 hua enhancer 2, RNA helicase, ATP-dependent, SK12/DOB1 protein (.1) Potri.009G041200 [exp] 167 / 1e-43 AT3G46960 1988 / 0.0 RNA helicase, ATP-dependent, SK12/DOB1 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08148 [flax] [poplar] DSHCT DSHCT (NUC185) domain
Representative CDS sequence Show only first row Show all	>Lus10022945 pacid=23146186 polypeptide=Lus10022945 locus=Lus10022945.g ID=Lus10022945.BGIv1.0 annot-version=v1.0 ATGGGTTTGAACATGCCTGCCAAGACTGTTGTTTTTACGAATGTGAAGAAGTTTGATGGTGATAGTCACCGTTATATGGCATCTGGTGAATATATCCAGA TGAGCGGAAGAGCTGGACGACGTGGCAAAGATGACCGCGGCATTTGTCTTTTAATGATCGATGATCAAATGGAGATGACCACACTCAAGGACATGATTTT GGGTAAACCAGCCCCTCTAGTTAGTACTTTTAGGCTGAGCTACTATTCCATTTTAAACTTATTGAGCCGTGCGGAAGGTCAGTTCACTGCAGAGCATGCT TTACCAGATATAGGGAACAAGGTTTCAAAACTTGAACAAGAAGCTACTATCCTGGGTACAAAAGGAGATGACAAAGTTGCTGAGTATCATAAACTAAAGC TAGATATTGTTCAGCTTGAGAAAAAGATGATGACAGAAATCACAAGGCCTGAAAGAGTGCTTTATTATTTATGCCCTGGCCGACTGGTCAGAGTCAGAGA AGGGGGAGCTGATTGGGGCTGGGGAGTTGTAGTGAATGTTGTGAAGAAACCATCTATAGGGACAGGGATGCTGCCTTCTCATGGTTGTGGCTATATAGTT GATACTTTACTTCATTGCACACCTGGATCTAATCAGAGTGTCTCGAGGTCCAAGCCTTGCCGTCCCCAGCCTGGAGAAAAGGGTGAGATGCATGTGGTAC CTGTTGAGTTGCCTTTGATATCTGCTCTCAGTAAAGTAAGGATAACAATTCCATCTGATCTCCGACCCTTGGAAGAAAGGCAAGGCATTCTTATAGCACT TGAAGAATTAGGATCCCGGTTTCCAGAAGGTCTTCCAAAACTTAATCCAGTAAAGGATATGAAAATTGAAGATCCCGAAATTGTTGACTTGGTCAAGCGA ATTGAAGAATTGGAAAGGACGTTATATGCACATCCTGTGCACAAGTCTCAAGATGTGAATCAAATTAGAAGTTTCCAAAAGAAGGCTGAGGTGGATCATG AAATTCAACAACTAAAGCTGAAAATGAAGGACTCTCAGCTGCAAAAATTCCGTGATGAACTCAAGAACCGATCACGAGTTCTGAAAAGACTCGGTCATAT AGATGGTGATGGTGTTGTTCAGCTAAAGGGTCGGGCAGCTTGTTTGATAGATACAGGAGATGAACTACTTGTAACAGAACTTATGTTCAACGGTACCTTT AATGAACTTGATCATCACCAAGTTGCAGCTCTTGCAAGCTGCTTCATTCCAGTGGATAAATCAAGTGAGCAAATACATTTGAGAAAAGAGCTTGCCAAAC CATTGCAGCAACTCCAACAAAGCGCCCGGAAAATAGCAGAGATACAATATGAGTGTAAATTGGAAATAAATGTGGACGAGTATGTTGATTCGACCGTGAG GCCATTCTTGATGGACGTGATCTACTGCTGGTCAAAGGGAGCTAGCTTTGCAGAAGTTATACAAATGACTGATATCTTCGAAGGTAGCATCATTAGGAGT GCCAGACGGTTAGATGAATTCTTGAACCAGTTACGTGCGGCTGCTCAGGCTGTTGGAGAAACCAGTTTGGAAGAAAAATTTGAAGCAGCGTGCAAAAGCC TTCAACGGGGAATTATGTTCGCCAACTCTCTGTATCTGTAA
AA sequence Show only first row Show all	>Lus10022945 pacid=23146186 polypeptide=Lus10022945 locus=Lus10022945.g ID=Lus10022945.BGIv1.0 annot-version=v1.0 MGLNMPAKTVVFTNVKKFDGDSHRYMASGEYIQMSGRAGRRGKDDRGICLLMIDDQMEMTTLKDMILGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHA LPDIGNKVSKLEQEATILGTKGDDKVAEYHKLKLDIVQLEKKMMTEITRPERVLYYLCPGRLVRVREGGADWGWGVVVNVVKKPSIGTGMLPSHGCGYIV DTLLHCTPGSNQSVSRSKPCRPQPGEKGEMHVVPVELPLISALSKVRITIPSDLRPLEERQGILIALEELGSRFPEGLPKLNPVKDMKIEDPEIVDLVKR IEELERTLYAHPVHKSQDVNQIRSFQKKAEVDHEIQQLKLKMKDSQLQKFRDELKNRSRVLKRLGHIDGDGVVQLKGRAACLIDTGDELLVTELMFNGTF NELDHHQVAALASCFIPVDKSSEQIHLRKELAKPLQQLQQSARKIAEIQYECKLEINVDEYVDSTVRPFLMDVIYCWSKGASFAEVIQMTDIFEGSIIRS ARRLDEFLNQLRAAAQAVGETSLEEKFEAACKSLQRGIMFANSLYL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10022945 [exp]	0	1
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	4.1	0.9442
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10019482 [exp]	6.7	0.9323
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	8.0	0.9332
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	8.2	0.9320
AT4G19610			nucleotide binding;nucleic aci...		Lus10018277 [exp]	9.4	0.9092
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Lus10040493 [exp]	10.9	0.9234
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Lus10033871 [exp]	11.0	0.9236
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Lus10020862 [exp]	11.6	0.9247
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Lus10043332 [exp]	15.8	0.9186
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	16.2	0.8367

Compare expression of checked genes

Lus10022945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.