Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35390 585 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G07040 560 / 0 ATPRK2A Leucine-rich repeat protein kinase family protein (.1) AT3G20190 529 / 4e-180 Leucine-rich repeat protein kinase family protein (.1) AT4G31250 505 / 6e-171 Leucine-rich repeat protein kinase family protein (.1) AT1G72460 374 / 2e-120 Leucine-rich repeat protein kinase family protein (.1) AT5G20690 364 / 2e-116 Leucine-rich repeat protein kinase family protein (.1) AT3G42880 362 / 5e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G50610 327 / 3e-102 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 301 / 1e-92 RLK902 receptor-like kinase 902 (.1) AT1G68400 301 / 2e-92 leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027597 [exp] 1149 / 0 AT5G35390 603 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10017144 [exp] 801 / 0 AT5G35390 597 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10026988 [exp] 511 / 5e-173 AT4G31250 606 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10020183 [exp] 505 / 7e-171 AT4G31250 599 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015678 [exp] 403 / 2e-131 AT1G72460 466 / 7e-157 Leucine-rich repeat protein kinase family protein (.1) Lus10013165 [exp] 374 / 3e-120 AT5G20690 470 / 5e-158 Leucine-rich repeat protein kinase family protein (.1) Lus10005175 [exp] 351 / 1e-112 AT5G20690 417 / 1e-138 Leucine-rich repeat protein kinase family protein (.1) Lus10035710 [exp] 342 / 9e-110 AT3G20190 509 / 3e-175 Leucine-rich repeat protein kinase family protein (.1) Lus10008128 [exp] 338 / 4e-107 AT1G72460 412 / 8e-137 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G078600 [exp] 679 / 0 AT5G35390 660 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G147300 [exp] 674 / 0 AT5G35390 629 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 555 / 0 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G002700 [exp] 548 / 0 AT3G20190 415 / 1e-136 Leucine-rich repeat protein kinase family protein (.1) Potri.007G002000 [exp] 541 / 0 AT3G20190 437 / 4e-145 Leucine-rich repeat protein kinase family protein (.1) Potri.003G068800 [exp] 405 / 2e-132 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1) Potri.001G166300 [exp] 405 / 3e-131 AT3G42880 513 / 6e-174 Leucine-rich repeat protein kinase family protein (.1) Potri.006G139700 [exp] 397 / 2e-129 AT3G42880 611 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G279300 [exp] 367 / 7e-118 AT4G31250 570 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G170274 [exp] 337 / 2e-109 AT3G20190 408 / 1e-137 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10022946 pacid=23146166 polypeptide=Lus10022946 locus=Lus10022946.g ID=Lus10022946.BGIv1.0 annot-version=v1.0 ATGATGGTTCGTCATCATAAATGCGGTTATAATGGCAATGCAAATATGTATTTGTACGTCCTTGTCATTTCCCTCTACCTTGTTCCCTCCCGGGGGCAAA CAGAGTCTGAGATCCTCCTCAAGTTCAAGGCCTCTCTTGGGAATTCCAGGGCCCTTGTGGATTGGAACCAGGGAACCAACGTTTGCGATGGTGATAGAGC CAATTGGATAGGTGCGCTTTGTGGTGAAGGTTTGGTTTGGGGTTTACAACTCGAGACAATGGGGCTAAAGGGGAAGATCGATGTGGACAGTCTGGCGAAA TTGGAGGAGCTGAAAACATTGAGTCTAATGAACAACAAATTCGAAGGTGACTTGCCGGAGGTGAAGAAGCTAGGCGGGTTGAGGTCGTTGTACCTGTCGA ATAACCAATTTAGCGGGGATATTCCAATGGATGCTTTCGAAGGGATGGCCAAATTGAAGAAACTGTATCTGTCGGGGAATAAGTTTACAGGGGAAATCCC ATCCTCATTAGCTGCGCTATCCAAGATTACAACCTTGAGGCTTGAACAAAATGAATTCACAGGCCAACTGCCTAAATTTACAGCCAAGTTTGAGTCTTTC AATGCTTCAAATAACATGTTGGAAGGTCCTATTCCTCCTACCCTCTCCAACATGGCTGCATCTGCATTTTCTGGGAACAAAGAGTTATGTTCCAAACCAT TATTAAGATGCAAATTAGGCATTCATGTGGCCGGCAGCGCCCCAGCCCCATCCCCAACGCCGTCCGCCACACCAACAAGAAGCATTGTGACTGACTCAAC CGATGTGGAAAAGAACGACCCAACTGATGATCCTCTAGCGGATACCATACCTGTGTGTGGGATCATCGCAGCTGCACTCATCCTGATGCGACGCCGCAAA CAAACAACTGATCATGAATCATCATCAATCGAGTCCCTACAGCAGGATGCCAATCACCATAAGAGGGCCCCATCCCAAGACAACAACAAAATCAACAGTA TGAACAAGGGGGTTGGTGCAGTGGTGATGGCAGCGGAGGTGAAGCTATCGTTCGTAAGGGAGGACAGGGGGAAGTTCGAGCTGCAAGACTTGCTTAAGGC GTCGGCAGAGATACTAGGGAGCGGGTGCTTCGGGGCGTCGTACAAGGCGGCACCAATGACGGGGGAGGTGATGGTTGTCAAGAGGTTTAAGCAGATGAAT AACGTGGGTAGGGAAGAGTTTCATGAGCATATGAGGCGGCTTGGGAGGTTGAGGCATACAAACTTGTTGCCCCTTGTTGCTTATTACTACAGGAAGGAAG AAAAGCTCTTGATTCATGACTTTGTTCCCTATGGTAGTTTGGCTGTCCATCTCCATGGACAACAACAACCCACCATAGAGTGGGACAACAGGTTGAAGAT AATCAAAGGAGTAGCAAAGGGACTAGCTTACCTTTATAAGGAACTCCCTAGCTTGATGGCACCACATGGACACCTGAAATCCAACAATGTCCTCTTGGGC GACAACTTCGAGCCATACCTCACTGACTACGCACTCATCCCAGTCATCAACTCCGAGAATGCACAAGAGCTCATGGTTGCCTACAAATCCCCAGAGTATC TCCGTCATGGTCGGGTCACTAAAAAAACCGACGTCTGGTCACTTGGGATGCTCATCCTCGAGGTCATCACTGGTAAACTCCCTTCCACCTTCCTCAAACA AGGAGGAGGAGGAAGCAACAATAGTGACGGCAGTAGCATTCCTAGCAGAGCGGGAGATGATAAGGAGGAAGTGGATCTGGCGACTTGGGTAACAAGTATA CCAGAAGAGCAATGGTGGAGAGATGTAATTGACAAGCAACTGTGGGAGGAGATGAACAACCATAACAAAGGAGAAATGGTGAAGCTTGTGAAGATAGGAG TGAGTTGTTGCCAAGAGGACTTGGAGAAGAGGCCTGATTTGAAGGAGGCATTACAGAGGATTGATGATATCAAGGTCAATGATGGGGATAACTTTGATGA TGATTTCTATTCCTTGCATAGTGAAGGTGTTGGTGTTGGTGTTAGTGGGGATAGAAGGAGGCCTTCTAGGCAGTTGTCTGCTGATTTCAGCGACATATCT TGA
AA sequence Show only first row Show all	>Lus10022946 pacid=23146166 polypeptide=Lus10022946 locus=Lus10022946.g ID=Lus10022946.BGIv1.0 annot-version=v1.0 MMVRHHKCGYNGNANMYLYVLVISLYLVPSRGQTESEILLKFKASLGNSRALVDWNQGTNVCDGDRANWIGALCGEGLVWGLQLETMGLKGKIDVDSLAK LEELKTLSLMNNKFEGDLPEVKKLGGLRSLYLSNNQFSGDIPMDAFEGMAKLKKLYLSGNKFTGEIPSSLAALSKITTLRLEQNEFTGQLPKFTAKFESF NASNNMLEGPIPPTLSNMAASAFSGNKELCSKPLLRCKLGIHVAGSAPAPSPTPSATPTRSIVTDSTDVEKNDPTDDPLADTIPVCGIIAAALILMRRRK QTTDHESSSIESLQQDANHHKRAPSQDNNKINSMNKGVGAVVMAAEVKLSFVREDRGKFELQDLLKASAEILGSGCFGASYKAAPMTGEVMVVKRFKQMN NVGREEFHEHMRRLGRLRHTNLLPLVAYYYRKEEKLLIHDFVPYGSLAVHLHGQQQPTIEWDNRLKIIKGVAKGLAYLYKELPSLMAPHGHLKSNNVLLG DNFEPYLTDYALIPVINSENAQELMVAYKSPEYLRHGRVTKKTDVWSLGMLILEVITGKLPSTFLKQGGGGSNNSDGSSIPSRAGDDKEEVDLATWVTSI PEEQWWRDVIDKQLWEEMNNHNKGEMVKLVKIGVSCCQEDLEKRPDLKEALQRIDDIKVNDGDNFDDDFYSLHSEGVGVGVSGDRRRPSRQLSADFSDIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35390			Leucine-rich repeat protein ki...		Lus10022946 [exp]	0	1
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	6.8	0.8021
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	7.5	0.7906
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018704 [exp]	8.1	0.7562
AT4G13450			Adenine nucleotide alpha hydro...		Lus10023716 [exp]	10.1	0.7969
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Lus10037117 [exp]	11.0	0.7628
AT5G05570			transducin family protein / WD...		Lus10002478 [exp]	13.1	0.6872
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10022929 [exp]	16.8	0.7945
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10019762 [exp]	17.7	0.7239
AT2G34050			unknown protein		Lus10020428 [exp]	18.2	0.7065
					Lus10025020 [exp]	19.0	0.7464

Compare expression of checked genes

Lus10022946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.