Plant FIBer expression Database

Lus10022947 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G57140 507 / 2e-180 ATPAP28, PAP28 purple acid phosphatase 28 (.1)
AT5G63140 318 / 3e-106 ATPAP29, PAP29 purple acid phosphatase 29 (.1)
AT2G46880 289 / 1e-94 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
AT3G10150 94 / 5e-21 ATPAP16, PAP16 purple acid phosphatase 16 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027596
[exp]
793 / 0 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1)
Lus10010289
[exp]
333 / 9e-112 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1)
Lus10009863
[exp]
329 / 1e-110 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1)
Lus10018030
[exp]
96 / 2e-21 AT3G10150 492 / 5e-175 purple acid phosphatase 16 (.1)
Lus10031039
[exp]
81 / 2e-16 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G074500
[exp]
580 / 0 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
Potri.006G074300
[exp]
573 / 0 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1)
Potri.002G183000
[exp]
345 / 2e-116 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1)
Potri.002G183200
[exp]
340 / 2e-114 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1)
Potri.014G109100
[exp]
336 / 3e-113 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1)
Potri.016G042500
[exp]
107 / 1e-25 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0163 Calcineurin PF00149 Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence
>Lus10022947 pacid=23146138 polypeptide=Lus10022947 locus=Lus10022947.g ID=Lus10022947.BGIv1.0 annot-version=v1.0
ATGAAATTCCAAATAGTTTCAGAATCGACGACCAATTCCTTCCTTTATTTAATTCTCATACTCTCCACCGTCTTTCTCCTTCACTCCCGAATCGCCCCCA
GGTTGCTCGTCGGCCACCACCCACTGCACCTGAAGCGGTCATCGGATCTCCCCTTACGGTTTCGAGACGATGGCACTTTCAAGATCCTCCAGGTTGCTGA
CATGCATTTCGGCACCGGAATGGTCACTCGTTGCAGAGACGTATTGGCTTCTGAGTTCGACTACTGTTCCGATCTCAATACCACCCGCTTCCTCCAGCGG
ATGATCGAATTTGAGAAGCCTGATTTCATCGCTTTTACAGGGGATAATATATTTGGAAGTAGTACCACTGATGCTGCTGAATCACTGCTTCGTGTCTTTA
GTCCAGCCATGGACTCTAAACTTCCGTGGGCAGCAGTGTTAGGTAATCATGACCAGGAATCTACAATGACCCGTGAAGAATTGATGTATTTTTTATCGCT
TATGGATTACTCTGTTTCACAAGTCAATCCATCTACTACAAGACCTGTTAATTATGTGGAATTGCCCAAAACAAGGAAAATTGATGGATTTGGAAATTAT
GATCTCCAAGTATATGGTGCTCCTGGCTCTAATGTGGCAAATCAAAGTGTCATGAATCTTTACTTCCTTGATAGTGGAGACAGAGAATTAGTTCAAGGAA
GACGTACTTATGGGTGGATTAAAGAATCTCAGCTTCATTGGCTCCATGATATTTCTAACAGAAATAAGGACCAGAAGGAGAAACTTCATTACATAACTGA
GGATTCATCGATGGTTGCAAATCCTGCACTTGCTTTCTTCCACATCCCGATCCCTGAAATTAGACAGCTATACTATCAAAAGATCATTGGCCAGTTTCAA
GAAGGTGTTGCTTGTTCATCAGTGAACGCAGGAGTCCTGCAGGCGTTTGTATCAATGAGAGATGTGAAGGCTGTTTTTATGGGCCACGATCACACCAACG
ACTTCTGTGGAACTTTAAGTGGTATCTGGTTTTGTTACGGAGGTGGGTTTGGATACCACGGTTATGGAAAAGCTGGGTGGCCACGCAGAGGAAGAATAAT
ATTAGCTGAACTGGAGAAGGGTGAACAGTCATGGAGAGGAGTGGAAAGAATCAGGACGTGGAAGCGTTTAGATGACGAACAATTAAACAAGATCGATGAA
CAGATCCTGTGGGAATCGTAG
AA sequence
>Lus10022947 pacid=23146138 polypeptide=Lus10022947 locus=Lus10022947.g ID=Lus10022947.BGIv1.0 annot-version=v1.0
MKFQIVSESTTNSFLYLILILSTVFLLHSRIAPRLLVGHHPLHLKRSSDLPLRFRDDGTFKILQVADMHFGTGMVTRCRDVLASEFDYCSDLNTTRFLQR
MIEFEKPDFIAFTGDNIFGSSTTDAAESLLRVFSPAMDSKLPWAAVLGNHDQESTMTREELMYFLSLMDYSVSQVNPSTTRPVNYVELPKTRKIDGFGNY
DLQVYGAPGSNVANQSVMNLYFLDSGDRELVQGRRTYGWIKESQLHWLHDISNRNKDQKEKLHYITEDSSMVANPALAFFHIPIPEIRQLYYQKIIGQFQ
EGVACSSVNAGVLQAFVSMRDVKAVFMGHDHTNDFCGTLSGIWFCYGGGFGYHGYGKAGWPRRGRIILAELEKGEQSWRGVERIRTWKRLDDEQLNKIDE
QILWES

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Lus10022947
[exp]
0 1
AT2G33470 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFE... Lus10011806
[exp]
2.2 0.8322
AT2G33470 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFE... Lus10021169
[exp]
2.4 0.8492
AT1G21070 Nucleotide-sugar transporter f... Lus10036606
[exp]
4.2 0.8543
AT4G17960 unknown protein Lus10040087
[exp]
5.5 0.8123
AT4G19900 alpha 1,4-glycosyltransferase ... Lus10018315
[exp]
6.8 0.8642
AT4G11090 TBL23 TRICHOME BIREFRINGENCE-LIKE 23... Lus10032367
[exp]
10.8 0.8418
AT3G02350 GAUT9 galacturonosyltransferase 9 (.... Lus10003045
[exp]
13.9 0.8269
AT1G27200 Domain of unknown function (DU... Lus10036676
[exp]
14.8 0.7917
AT5G67470 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, ... Lus10025195
[exp]
15.4 0.7988
AT2G31440 unknown protein Lus10025574
[exp]
17.2 0.8097

Lus10022947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.