Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20700 80 / 3e-18 Protein of unknown function (DUF581) (.1) AT1G74940 76 / 1e-16 Protein of unknown function (DUF581) (.1) AT1G19200 71 / 5e-15 Protein of unknown function (DUF581) (.1) AT1G22160 64 / 9e-13 Protein of unknown function (DUF581) (.1) AT5G65040 55 / 6e-10 Protein of unknown function (DUF581) (.1) AT5G11460 57 / 1e-09 Protein of unknown function (DUF581) (.1) AT5G49120 53 / 6e-09 Protein of unknown function (DUF581) (.1) AT1G78020 52 / 1e-08 Protein of unknown function (DUF581) (.1) AT2G44670 50 / 2e-08 Protein of unknown function (DUF581) (.1) AT4G17670 51 / 3e-08 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027595 [exp] 388 / 2e-139 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10027642 [exp] 59 / 1e-10 AT1G74940 89 / 6e-22 Protein of unknown function (DUF581) (.1) Lus10011923 [exp] 58 / 2e-10 AT1G74940 81 / 3e-19 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 56 / 5e-09 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 55 / 6e-09 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 53 / 2e-08 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 52 / 8e-08 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10012417 [exp] 52 / 9e-08 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006499 [exp] 49 / 4e-07 AT5G49120 79 / 2e-19 Protein of unknown function (DUF581) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G146800 [exp] 149 / 6e-45 AT5G20700 76 / 2e-16 Protein of unknown function (DUF581) (.1) Potri.006G078300 [exp] 139 / 5e-41 AT5G20700 91 / 8e-22 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 81 / 2e-18 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.018G035400 [exp] 60 / 2e-10 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 57 / 1e-09 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 56 / 1e-09 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.006G245200 [exp] 56 / 2e-09 AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 52 / 1e-08 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 54 / 2e-08 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.002G092900 [exp] 51 / 4e-08 AT1G22160 137 / 5e-42 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [flax] [poplar] TRASH PF04570 [flax] [poplar] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Lus10022948 pacid=23146149 polypeptide=Lus10022948 locus=Lus10022948.g ID=Lus10022948.BGIv1.0 annot-version=v1.0 ATGGAGAAAAAGGCGCCCAGAAGAAGCTTCGTTGACGGTGGAGTTGGGTTGGGAATAGTCGCTGCGTTGACTGATTCCAGCGATCGTACGAATATCTCTC ACCTGGCTGCTGCTCTGTCCATGAGATCCAGTCCAATCCCGATTATGGTCCCTAATTTCAACTTCAATTTGGGCGATCGGCCTCAAACTGCACGCAGTGT CGGCTCTGAGAGCGATGAGTTGTATACCTGTGTGGTTTCTAATGTTGGCAAGGACAAGGGGATGAACAAGTTTGTTTACTATGGGGATAAGGTTTCTGGG TTTTGCGTTGACCCGAGTCCGGGAATGTTTTATGCTTCTTCGTCGCCGATGGTGATGAATCCTGTTTTGGGTGATTGGACGAGCGGCTTCCCTAACCAAG ATTTCTTGGCTTCTTGCTATCTCTGCAAAAAGTTGCTCCATGGGCTGGATATTTTCATGTACAGGGGGGAGAAAGCATTCTGTAGCGTACAGTGCCGGGA ACGCCTGATAAGGAATGAAAAGTACAGTGTGAAATACGGTGGTGAAATGAGGAAATCTGCACATGAACGCTCCTCCATGTCTCCCTGCACTTCACCTCAG GTTTATCTTGCTGAGGTTGCTGCTGCATAA
AA sequence Show only first row Show all	>Lus10022948 pacid=23146149 polypeptide=Lus10022948 locus=Lus10022948.g ID=Lus10022948.BGIv1.0 annot-version=v1.0 MEKKAPRRSFVDGGVGLGIVAALTDSSDRTNISHLAAALSMRSSPIPIMVPNFNFNLGDRPQTARSVGSESDELYTCVVSNVGKDKGMNKFVYYGDKVSG FCVDPSPGMFYASSSPMVMNPVLGDWTSGFPNQDFLASCYLCKKLLHGLDIFMYRGEKAFCSVQCRERLIRNEKYSVKYGGEMRKSAHERSSMSPCTSPQ VYLAEVAAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20700			Protein of unknown function (D...		Lus10022948 [exp]	0	1
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10021134 [exp]	5.2	0.7297
AT2G17350			unknown protein		Lus10022984 [exp]	7.7	0.7642
AT1G36320			unknown protein		Lus10036666 [exp]	9.6	0.7247
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	10.6	0.8019
AT4G13200			unknown protein		Lus10011869 [exp]	12.3	0.7836
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	12.6	0.7463
AT5G03150	C2H2ZnF	JKD	JACKDAW, C2H2-like zinc finger...		Lus10019927 [exp]	12.7	0.6978
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	13.0	0.7313
AT4G13200			unknown protein		Lus10022803 [exp]	15.4	0.7481
AT1G13680			PLC-like phosphodiesterases su...		Lus10035130 [exp]	16.4	0.7416

Compare expression of checked genes

Lus10022948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.