Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G35400 436 / 2e-151 Pseudouridine synthase family protein (.1.2) AT3G06950 56 / 1e-08 Pseudouridine synthase family protein (.1) AT1G20370 52 / 6e-07 Pseudouridine synthase family protein (.1) AT1G76120 43 / 0.0003 Pseudouridine synthase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027594 [exp] 742 / 0 AT5G35400 492 / 1e-173 Pseudouridine synthase family protein (.1.2) Lus10039480 [exp] 50 / 2e-06 AT3G06950 411 / 6e-144 Pseudouridine synthase family protein (.1) Lus10005641 [exp] 48 / 2e-05 AT1G20370 588 / 0.0 Pseudouridine synthase family protein (.1) Lus10021231 [exp] 47 / 2e-05 AT1G76120 584 / 0.0 Pseudouridine synthase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G147400 [exp] 522 / 0 AT5G35400 488 / 8e-172 Pseudouridine synthase family protein (.1.2) Potri.008G206200 [exp] 51 / 6e-07 AT3G06950 452 / 8e-161 Pseudouridine synthase family protein (.1) Potri.002G014400 [exp] 47 / 3e-05 AT1G20370 562 / 0.0 Pseudouridine synthase family protein (.1) Potri.005G247000 [exp] 46 / 5e-05 AT1G20370 560 / 0.0 Pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0649 [flax] [poplar] PseudoU_synth PF01416 [flax] [poplar] PseudoU_synth_1 tRNA pseudouridine synthase
Representative CDS sequence Show only first row Show all	>Lus10022949 pacid=23146178 polypeptide=Lus10022949 locus=Lus10022949.g ID=Lus10022949.BGIv1.0 annot-version=v1.0 ATGATGGAAGAACAGATACAATCAGAGGAGAAGGTTTATTTCCATTACAGTCACACCGTTCCCTGCAAATTCGCTAGATGGACCGCAAGGGAAAGCTTTG AGCTCATGTACGGTCGGCACTGGCAAGAAGTTGTGGATTTCTATTCCAATGTGGTGAATGGGAAGTCGTCACTGTTTGAACTTTTTGAAAATGGTCAGAC ACTTTTGAAACTTGATGATGCTAAACTTTCTGAGGTTGGCAATAGAACCAACTATGAGGGTGGTTTGAAGGATGAGAGAACAGGGAGATGGGAAAGACTA ACATTCAAGATAGTTCTTTCCTATCACGGGTGTTCGTTTGATGGGTGGCAGAAGCAACCCGGCCTCAACACTGTTCAGGGCTTAATAGAACAGTGTCTGG GCCAATTTGTCGATGAGAGGAAAGCTCAACTACTTAAAGAAAAATGCAAACCATTGGAAGGCTGTTCTTTTGTTGCTGGTCGCACAGACAAAGGAGTCTC AGCTCTACAGCAAGTGTGTTCTTTCTATACATGGAGAAAGGATATTATGATTCGCGAAATTGAAGATGTTATCAACAACTCAGCACCAGGGAGAATTAGG GTTGTGTCAATTTCTGAGGTTTCACGTTCATTCCATCCTAATTTTTCAGCAAAATGGAGGCGATACTTGTATATCTTTCCTCTTAATGATGGTGAAAATA AGGAGCCAGGCTTCGAAAGTGACGGTGACCAGAACAATTTAAGGGTCTATGGACTCTGCAGAGAGCAGACAGTTGGATCCGATGAGCTCAATGGTCAAGA GGAGGATAAGAACCTGACTGTCAGTTGGGAGGATGAACTAGAAGAAGGTGCAGAGAAACCCAAGACATTTTCTGTATGCAAGGTTAACCGACTTCTACAG CAACTAGAGGGAAAGTTATTATCTTACACAGTATTTGCCCGCGACACCAAAGCTTCCAGAAGCATAGGTCCTCCAACAGAGTGCTTCATCTATCATGCCC GAGCAGCAGAAGGCAGATTACCACACCCTGATCCTGGAGCAGGAAAAAAAGTTATGTGTGTGGAGCTCATCGGCAATCGCTTCCTGCGCGGGATGGTACG GGTTCTGGTGGCGACATCGATAAGAGAGGCGGTTGTTGGTGCCGAAGATGATGCTCTGTTGAAGCTGATGGATGCTACATGTAGAAGGGCCACTGCGCCT CCTGCTCCTCCAGAAGGTCTGTGTTTAGTTAATGTAGGGTATACTGAATTTGACCCTCAGGACTGCATCATTCCTTGA
AA sequence Show only first row Show all	>Lus10022949 pacid=23146178 polypeptide=Lus10022949 locus=Lus10022949.g ID=Lus10022949.BGIv1.0 annot-version=v1.0 MMEEQIQSEEKVYFHYSHTVPCKFARWTARESFELMYGRHWQEVVDFYSNVVNGKSSLFELFENGQTLLKLDDAKLSEVGNRTNYEGGLKDERTGRWERL TFKIVLSYHGCSFDGWQKQPGLNTVQGLIEQCLGQFVDERKAQLLKEKCKPLEGCSFVAGRTDKGVSALQQVCSFYTWRKDIMIREIEDVINNSAPGRIR VVSISEVSRSFHPNFSAKWRRYLYIFPLNDGENKEPGFESDGDQNNLRVYGLCREQTVGSDELNGQEEDKNLTVSWEDELEEGAEKPKTFSVCKVNRLLQ QLEGKLLSYTVFARDTKASRSIGPPTECFIYHARAAEGRLPHPDPGAGKKVMCVELIGNRFLRGMVRVLVATSIREAVVGAEDDALLKLMDATCRRATAP PAPPEGLCLVNVGYTEFDPQDCIIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10041239 [exp]	2.0	0.7965
AT3G58070	C2H2ZnF	GIS	GLABROUS INFLORESCENCE STEMS, ...		Lus10021081 [exp]	3.7	0.8307
AT3G15130			Tetratricopeptide repeat (TPR)...		Lus10030124 [exp]	3.9	0.8046
AT5G16020		GEX3	gamete-expressed 3 (.1)		Lus10017838 [exp]	6.2	0.7613
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Lus10035703 [exp]	6.3	0.7782
					Lus10021443 [exp]	7.5	0.7806
AT2G40760			Rhodanese/Cell cycle control p...		Lus10034243 [exp]	10.2	0.8153
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	10.8	0.7739
AT2G16250			Leucine-rich repeat protein ki...		Lus10007171 [exp]	18.1	0.7136
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10036924 [exp]	19.8	0.7350

Compare expression of checked genes

Lus10022949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.