Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26890 315 / 3e-103 MAPKKK16 mitogen-activated protein kinase kinase kinase 16 (.1) AT5G55090 298 / 8e-97 MAPKKK15 mitogen-activated protein kinase kinase kinase 15 (.1) AT1G05100 259 / 3e-83 MAPKKK18 mitogen-activated protein kinase kinase kinase 18 (.1) AT2G32510 260 / 6e-83 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT4G36950 189 / 3e-56 MAPKKK21 mitogen-activated protein kinase kinase kinase 21 (.1) AT3G50310 188 / 1e-55 MKKK20, MAPKKK20 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) AT5G67080 180 / 1e-52 MAPKKK19 mitogen-activated protein kinase kinase kinase 19 (.1) AT1G07150 182 / 5e-52 MAPKKK13 mitogen-activated protein kinase kinase kinase 13 (.1.2) AT3G06030 176 / 2e-48 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G09000 173 / 2e-47 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021551 [exp] 627 / 0 AT5G55090 326 / 7e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Lus10030042 [exp] 262 / 3e-83 AT2G32510 324 / 2e-108 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10035284 [exp] 261 / 9e-83 AT2G32510 319 / 9e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Lus10031544 [exp] 232 / 3e-70 AT1G05100 298 / 3e-97 mitogen-activated protein kinase kinase kinase 18 (.1) Lus10012668 [exp] 189 / 7e-56 AT3G50310 347 / 5e-119 MAPKK kinase 20, mitogen-activated protein kinase kinase kinase 20 (.1) Lus10010519 [exp] 176 / 2e-48 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 176 / 2e-48 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10015185 [exp] 172 / 3e-47 AT1G09000 692 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Lus10019340 [exp] 160 / 4e-45 AT5G67080 306 / 6e-103 mitogen-activated protein kinase kinase kinase 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G007400 [exp] 307 / 7e-100 AT5G55090 326 / 3e-107 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.004G007700 [exp] 301 / 1e-97 AT5G55090 321 / 2e-105 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.014G155000 [exp] 290 / 6e-95 AT1G05100 317 / 3e-107 mitogen-activated protein kinase kinase kinase 18 (.1) Potri.002G228200 [exp] 284 / 1e-91 AT2G32510 321 / 2e-107 mitogen-activated protein kinase kinase kinase 17 (.1) Potri.003G130000 [exp] 196 / 1e-58 AT5G55090 232 / 2e-72 mitogen-activated protein kinase kinase kinase 15 (.1) Potri.007G044800 [exp] 193 / 1e-57 AT5G67080 350 / 6e-120 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.005G139300 [exp] 192 / 5e-57 AT5G67080 329 / 6e-112 mitogen-activated protein kinase kinase kinase 19 (.1) Potri.001G278600 [exp] 189 / 7e-55 AT1G07150 353 / 2e-117 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.009G073200 [exp] 189 / 1e-54 AT1G07150 360 / 9e-120 mitogen-activated protein kinase kinase kinase 13 (.1.2) Potri.005G139200 [exp] 184 / 6e-54 AT5G67080 305 / 2e-102 mitogen-activated protein kinase kinase kinase 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022951 pacid=23146110 polypeptide=Lus10022951 locus=Lus10022951.g ID=Lus10022951.BGIv1.0 annot-version=v1.0 ATGGAATGGTCTCGAGGACGCGTAATTGGCCTTGGTTCCACCGCCACCGTCTCTCTCGCTACCTGCCTTGCCTCCGGCGAGATCTTCGCTTTGAAATCCT CCTCCCTTTCATTGCAGAGAGAACAATCCATTCTCTCCAATCTCACCTCTCCCTACATTGTCAAGTACATAGGCTCCGCCGTTTCCTCCTGCGACAGTAC TCCTATGTACAATCTCTGTATGGAGTACGCCGCCGGCGGAAATCTGATGGACCTGATTCGGCGGCGCGGCGGCCGGCTCTGTGAGGCAGAGATCGGGACC ACAGCCCGCCGGATTCTGCTCGGATTGGAGTACTTGCACGCCCGAGGATTATTGCATTGCGACATCAAGGCTCACAACATACTCATAGACCAGCACGATG TGCCCATAATTGGGGATTTCGGGTGTGCAAAGTTTGTCAGCGGCGGGGGGGGGGGGGGTGTGTTTTCAGGTACGCCGGCCTTTATGTCGCCGGAGGTAGC TCGCGGAGAGGAGCAAGGGTTTGCGGCGGATGTTTGGGCGGTGGGGTGTACGGTGATTGAGATGGCGAGTGGGAGGATTCCGTGGGCGGAATTCGGGGAC AACAACCCTGTTTCTGCTATCTTCCGAATCGGGTTTACTGATGTGTCACCGGAGGTGCCCAGTTGGTTATCAGAGGAAGCCAAGGATTTTGTGTCCAAGT GTTTGATTAAAGACCAGAGAGAACGGTGGAGTGTTAAAGAGCTGTTAGATCACCCTTTCCTCGTGGAATCTAAAGAGCCAATTGAGTTTAAGGAGGTGGT TACTACAACTAGCACCCCAAGCTGCGTACTGGATCATGGGTTTTGGGAATCCCTGGAAGGAATTGATACTCCGCAAAATATGACGATCCAAGATATATGT TTCTCAATAATTCCAGCTGCTGATAGGATCAAGAGCCTGATTAGTGGGTTTCCGTCGAATTTGCCTCACTGGAGTTTTGATGATGATGGTTGGTTAACAG TAAGGGGAGGTAACGATGACAGCGAGGAGACAGAGGTGGTGGAGGAACAACAGTCCGAGGAAAACGATGCCGTTTTCTTTGGGAGAAGTGAATTCTATGG GCCACTGGAAGAAGATGCACCTCTGTTTTGGGGATATTCACCAATTTTGAATTTCGATGGAAGGTTGGGAGTGGAATTAGAATTAGAATTAAACGACTCC AATATTGTTATTATTACTAGTACTAGTAGTGGTAGTAGTAGTAGAAGAGATGGTTTTGTAGTTTGGAGAGAATTCGATAAAATTAGTAATACTAGTGATA AATTTTTCTTCGCAAAACTCTTTTGTGTGGGCTTTGGGCGGCAATTGTCTTCTTGCTCAAATTAA
AA sequence Show only first row Show all	>Lus10022951 pacid=23146110 polypeptide=Lus10022951 locus=Lus10022951.g ID=Lus10022951.BGIv1.0 annot-version=v1.0 MEWSRGRVIGLGSTATVSLATCLASGEIFALKSSSLSLQREQSILSNLTSPYIVKYIGSAVSSCDSTPMYNLCMEYAAGGNLMDLIRRRGGRLCEAEIGT TARRILLGLEYLHARGLLHCDIKAHNILIDQHDVPIIGDFGCAKFVSGGGGGGVFSGTPAFMSPEVARGEEQGFAADVWAVGCTVIEMASGRIPWAEFGD NNPVSAIFRIGFTDVSPEVPSWLSEEAKDFVSKCLIKDQRERWSVKELLDHPFLVESKEPIEFKEVVTTTSTPSCVLDHGFWESLEGIDTPQNMTIQDIC FSIIPAADRIKSLISGFPSNLPHWSFDDDGWLTVRGGNDDSEETEVVEEQQSEENDAVFFGRSEFYGPLEEDAPLFWGYSPILNFDGRLGVELELELNDS NIVIITSTSSGSSSRRDGFVVWREFDKISNTSDKFFFAKLFCVGFGRQLSSCSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26890		MAPKKK16	mitogen-activated protein kina...		Lus10022951 [exp]	0	1
AT1G09890			Rhamnogalacturonate lyase fami...		Lus10028212 [exp]	7.5	0.8772
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10005343 [exp]	10.8	0.8151
AT3G19680			Protein of unknown function (D...		Lus10012451 [exp]	13.9	0.7973
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10003468 [exp]	15.8	0.8501
AT2G37980			O-fucosyltransferase family pr...		Lus10017190 [exp]	16.1	0.8491
AT5G51890			Peroxidase superfamily protein...		Lus10027405 [exp]	16.8	0.8386
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10026609 [exp]	26.0	0.8034
AT5G07830		ATGUS2	glucuronidase 2 (.1)		Lus10015737 [exp]	26.4	0.8432
AT4G04960			Concanavalin A-like lectin pro...		Lus10025441 [exp]	26.7	0.8074
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Lus10012106 [exp]	29.4	0.8395

Compare expression of checked genes

Lus10022951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.