Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006005 [exp] 113 / 3e-31 ND / Lus10022526 [exp] 75 / 2e-16 ND / Lus10022149 [exp] 63 / 2e-12 ND / Lus10012497 [exp] 65 / 3e-12 ND / Lus10011659 [exp] 64 / 3e-12 ND / Lus10025017 [exp] 64 / 4e-12 ND / Lus10012429 [exp] 63 / 8e-12 ND / Lus10007158 [exp] 61 / 6e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022956 pacid=23146176 polypeptide=Lus10022956 locus=Lus10022956.g ID=Lus10022956.BGIv1.0 annot-version=v1.0 ATGCCGATTATAAAGATGCAACAAACTCTACTGTTCCTTCACCCCTTACCACAAATCGCCTTTTCCTCCCTACCTTACTATCATCGTATTCTCAACAGCA GAGTCTTTCTAAGCACAATCACCACCATCGTGCTTGGGGACCACATTCAACTGCCAGCTAATATCCTAGCTCATATGTTGAATCTCTCTACACAACGATT TGCTTTCAGAGTCCATAATGATCTCTGGAGGAACGGATTTGACATCGGAGATGCTCTCCTTGCGATTATCAATCTAGAGCTGCACAATATACCATTAGCC AGAGACTATCACGTCAGGGATGTTCTGGTAATTCTCGATATCTCTCCACCAGCATCACCCATTATTCACGAAGGTCTGGAGGATGAGCATTCCCCTTGGT CGCTGAATGATCCTCGTGAATATGAGGATGACTCCACCATTGCCATCAAGATCGAGAACATGGAGCTCTCTGAAGAAACACTAGATGCTTACGATAGACC AGAAGGTCAGATAAGCCCTCCGAAAGGAACACCAAAAGCCAATGAGCCTCACACAAGAATGAAATAA
AA sequence Show only first row Show all	>Lus10022956 pacid=23146176 polypeptide=Lus10022956 locus=Lus10022956.g ID=Lus10022956.BGIv1.0 annot-version=v1.0 MPIIKMQQTLLFLHPLPQIAFSSLPYYHRILNSRVFLSTITTIVLGDHIQLPANILAHMLNLSTQRFAFRVHNDLWRNGFDIGDALLAIINLELHNIPLA RDYHVRDVLVILDISPPASPIIHEGLEDEHSPWSLNDPREYEDDSTIAIKIENMELSEETLDAYDRPEGQISPPKGTPKANEPHTRMK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022956 [exp]	0	1
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	14.2	0.7379
AT1G45207			Remorin family protein (.2)		Lus10005708 [exp]	14.9	0.7302
AT4G13430		ATLEUC1, IIL1	isopropyl malate isomerase lar...		Lus10043129 [exp]	26.8	0.7047
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	34.4	0.7014
AT2G42450			alpha/beta-Hydrolases superfam...		Lus10024878 [exp]	55.1	0.6575
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10028358 [exp]	61.8	0.6778
AT1G05420	OFP	ATOFP12, OFP12	ARABIDOPSIS THALIANA OVATE FAM...		Lus10006120 [exp]	115.6	0.6285
AT5G66560			Phototropic-responsive NPH3 fa...		Lus10041276 [exp]	158.7	0.6140
AT4G37190			unknown protein		Lus10011023 [exp]	175.7	0.6190
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10042096 [exp]	193.2	0.6148

Compare expression of checked genes

Lus10022956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.