Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11910 760 / 0 ATAPA1, APA1 aspartic proteinase A1 (.1) AT1G62290 734 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G04460 667 / 0 Saposin-like aspartyl protease family protein (.1.2) AT4G22050 182 / 7e-53 Eukaryotic aspartyl protease family protein (.1) AT1G69100 169 / 1e-47 Eukaryotic aspartyl protease family protein (.1) AT3G12700 43 / 0.0003 Eukaryotic aspartyl protease family protein (.1.2) AT3G20015 43 / 0.0005 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021552 [exp] 980 / 0 AT1G11910 782 / 0.0 aspartic proteinase A1 (.1) Lus10032636 [exp] 862 / 0 AT1G11910 735 / 0.0 aspartic proteinase A1 (.1) Lus10020024 [exp] 732 / 0 AT1G11910 762 / 0.0 aspartic proteinase A1 (.1) Lus10015547 [exp] 710 / 0 AT1G11910 742 / 0.0 aspartic proteinase A1 (.1) Lus10043112 [exp] 702 / 0 AT1G11910 639 / 0.0 aspartic proteinase A1 (.1) Lus10035285 [exp] 588 / 0 AT1G11910 619 / 0.0 aspartic proteinase A1 (.1) Lus10030041 [exp] 501 / 6e-175 AT1G11910 535 / 0.0 aspartic proteinase A1 (.1) Lus10019309 [exp] 52 / 7e-07 AT5G43100 712 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020100 [exp] 46 / 5e-05 AT5G10770 190 / 7e-56 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356900 [exp] 804 / 0 AT1G11910 800 / 0.0 aspartic proteinase A1 (.1) Potri.011G007600 [exp] 768 / 0 AT1G11910 721 / 0.0 aspartic proteinase A1 (.1) Potri.004G007600 [exp] 751 / 0 AT1G11910 779 / 0.0 aspartic proteinase A1 (.1) Potri.013G002200 [exp] 641 / 0 AT1G11910 622 / 0.0 aspartic proteinase A1 (.1) Potri.002G228300 [exp] 602 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.005G002800 [exp] 578 / 0 AT1G11910 604 / 0.0 aspartic proteinase A1 (.1) Potri.010G003400 [exp] 529 / 0 AT1G62290 548 / 0.0 Saposin-like aspartyl protease family protein (.1.2) Potri.005G144600 [exp] 52 / 6e-07 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 43 / 0.0004 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 42 / 0.0006 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease CL0129 [flax] [poplar] PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 CL0129 [flax] [poplar] PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1
Representative CDS sequence Show only first row Show all	>Lus10022957 pacid=23146122 polypeptide=Lus10022957 locus=Lus10022957.g ID=Lus10022957.BGIv1.0 annot-version=v1.0 ATGGGAACGTTCAGATCTGTCACAGGAGCTCTTTTGCTTTGCTTGTTACTGCCTTTTGTTTTCGCTGCATCAAATGATGGGCTGCTCAGAATTGGATTAA GGAAGATAAAGTTTGATCAGAACAACCGGGTTGCTGCTCAGCTGGGTTCTAAGGAAGGAGAGTTGTTGAATGCTTCTATCAGAAAGTATGGTTTCCGTGG GAAACTGGGTGGTGCTGCCGATACCGACATAGTAACTCTGAAGAACTATATGGATGCGCAGTACTTTGGTGAGATTGGTGTTGGTACTCCGCCACAGACA TTTACGGTGATTTTCGACACTGGTAGTTCTAACTTGTGGGTGCCCTCCTCCAAGTGCTACTTCTCGCTATCTTGCTATTTCCACTCCAAGTACAAGTCCA GTCAGTCTAGTACCTACAAGAAGAATGGGAAATCTGCTGCTATCCAGTATGGAACTGGAGCTATTTCTGGCTTCTTCAGTGAGGATACTGTGAAAGTTGG TGATATTGTCGTCAAGAATCAGGAATTTATTGAAGCAACAAAAGAGCCAGGCCTCACATTCTTGGTAGCCAAGTTTGATGGAATACTAGGGCTTGGGTTT CAAGAGATTTCTGTTGGAAATTCTGTCCCCGTGTGGTACAACATGGTTGAACAAGGACTCATCAACGAGCCAGTTTTCTCATTCTGGTTTAACCGCAATG CTGATGAGGAACAAGGAGGTGAACTTGTTTTCGGAGGTGTGGATCCTAACCACTTTGTCGGTGAGCACACCTATGTCCCTGTGACAGAGAAAGGGTATTG GCAGTTCGACATGGGTGATGTTCTGATTGCTGGAAGATCCACTGGCTTCTGTTCTGGTGGCTGTGCAGCGATTGCCGACTCTGGAACCTCTTTGTTGGCT GGACCAACGGCAATTATTACAGAAGTTAATCATGCAATTGGTGCTACTGGGATAGTGAGCCAAGAATGCAAGACCGTAGTTTCTCAGTATGGAGAAACCA TAATTCAGATGCTTTTAGCTAAGAATGAACCTCAAAAGATATGCTCTCAGATAAGCTTATGTGAATTTGATGGGTCCAGAGGTGTCAGTATGGGCATTGA GAGTGTTGTGAGTGAGAATATTGAGAAAGCAGTCCACGCCACTAGTGAGGCCACTTGCGCTGCTTGTGAGATGGCAGTTGTCTGGATGCAGACTCAGCTT AAGCAGAATGAAACACAGGAGCGCATTCTTGACTATGCAAACAATCTCTGTGAGCGACTGCCCAGTCCAATGGGAGAATCAACTGTTGATTGTGGCAGCT TGTCTACCCTGCCTACTGTCTCGTTCACAATTGGGGGAAAAGTTTTTGACCTTACTCCCGAACAATATGTTCTCAAAGTTGGCGAGGGGCCTGCAGCTCA ATGTCTTAGCGGATTCACAGCTATTGATGTGGCACCTCCACGTGGTCCTCTCTGGATCCTGGGCGACGTGTTCATGGGCCGCTATCACACTGTGTTTGAC TATGGCAACCTTAGGATTGGATTTGCCGAAGCCGCGTAG
AA sequence Show only first row Show all	>Lus10022957 pacid=23146122 polypeptide=Lus10022957 locus=Lus10022957.g ID=Lus10022957.BGIv1.0 annot-version=v1.0 MGTFRSVTGALLLCLLLPFVFAASNDGLLRIGLRKIKFDQNNRVAAQLGSKEGELLNASIRKYGFRGKLGGAADTDIVTLKNYMDAQYFGEIGVGTPPQT FTVIFDTGSSNLWVPSSKCYFSLSCYFHSKYKSSQSSTYKKNGKSAAIQYGTGAISGFFSEDTVKVGDIVVKNQEFIEATKEPGLTFLVAKFDGILGLGF QEISVGNSVPVWYNMVEQGLINEPVFSFWFNRNADEEQGGELVFGGVDPNHFVGEHTYVPVTEKGYWQFDMGDVLIAGRSTGFCSGGCAAIADSGTSLLA GPTAIITEVNHAIGATGIVSQECKTVVSQYGETIIQMLLAKNEPQKICSQISLCEFDGSRGVSMGIESVVSENIEKAVHATSEATCAACEMAVVWMQTQL KQNETQERILDYANNLCERLPSPMGESTVDCGSLSTLPTVSFTIGGKVFDLTPEQYVLKVGEGPAAQCLSGFTAIDVAPPRGPLWILGDVFMGRYHTVFD YGNLRIGFAEAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10022957 [exp]	0	1
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	1.4	0.9624
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10021552 [exp]	1.4	0.9554
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10018310 [exp]	3.5	0.9461
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022189 [exp]	3.7	0.9195
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Lus10001194 [exp]	4.9	0.9267
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	7.1	0.9254
AT1G70160			unknown protein		Lus10029209 [exp]	7.3	0.9247
AT3G63220			Galactose oxidase/kelch repeat...		Lus10022061 [exp]	8.1	0.9131
AT5G19140		AtAILP1, AILP1	Aluminium induced protein with...		Lus10010505 [exp]	8.4	0.9162
AT1G18460			alpha/beta-Hydrolases superfam...		Lus10042972 [exp]	10.4	0.9140

Compare expression of checked genes

Lus10022957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.