Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03220 78 / 4e-17 Eukaryotic aspartyl protease family protein (.1) AT1G03230 77 / 9e-17 Eukaryotic aspartyl protease family protein (.1) AT5G19120 61 / 3e-11 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021939 [exp] 224 / 9e-73 AT5G19120 228 / 4e-71 Eukaryotic aspartyl protease family protein (.1) Lus10041004 [exp] 198 / 2e-64 AT5G19120 104 / 4e-26 Eukaryotic aspartyl protease family protein (.1) Lus10041224 [exp] 84 / 3e-19 AT1G03220 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021936 [exp] 79 / 2e-17 AT1G03220 536 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041223 [exp] 78 / 5e-17 AT1G03220 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021937 [exp] 76 / 1e-16 AT1G03220 347 / 2e-117 Eukaryotic aspartyl protease family protein (.1) Lus10036343 [exp] 74 / 2e-15 AT1G03220 469 / 2e-164 Eukaryotic aspartyl protease family protein (.1) Lus10021938 [exp] 72 / 8e-15 AT1G03220 501 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10041226 [exp] 68 / 1e-13 AT1G03220 382 / 1e-130 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G203100 [exp] 94 / 8e-23 AT1G03220 280 / 3e-90 Eukaryotic aspartyl protease family protein (.1) Potri.002G054900 [exp] 72 / 7e-15 AT1G03220 544 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.008G203200 [exp] 70 / 2e-14 AT1G03220 509 / 6e-180 Eukaryotic aspartyl protease family protein (.1) Potri.006G068900 [exp] 70 / 3e-14 AT1G03220 456 / 5e-159 Eukaryotic aspartyl protease family protein (.1) Potri.019G065200 [exp] 51 / 7e-08 AT1G03230 303 / 4e-99 Eukaryotic aspartyl protease family protein (.1) Potri.019G064800 [exp] 49 / 5e-07 AT1G03230 290 / 1e-93 Eukaryotic aspartyl protease family protein (.1) Potri.019G065000 [exp] 48 / 1e-06 AT1G03220 309 / 3e-101 Eukaryotic aspartyl protease family protein (.1) Potri.019G065100 [exp] 47 / 2e-06 AT1G03220 298 / 5e-97 Eukaryotic aspartyl protease family protein (.1) Potri.013G070300 [exp] 45 / 1e-05 AT1G03220 282 / 9e-91 Eukaryotic aspartyl protease family protein (.1) Potri.013G070325 [exp] 44 / 2e-05 AT1G03220 285 / 5e-92 Eukaryotic aspartyl protease family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022958 pacid=23146140 polypeptide=Lus10022958 locus=Lus10022958.g ID=Lus10022958.BGIv1.0 annot-version=v1.0 ATGGTCTTGATCGCTTCTCTCCCACTTATCATTGTCTTTACCTCTCATCCACATCATCATGCCTCCTCCAATCTCCTCCTACTCCCTGTCGCCAAAGATC CTGCCACTCACCAGTTCACTATCCTAATCCACCACCGTCCCCAACTCTTCATGCTCGTCGTCAATCTCGGTGGCCCTTCTCTCTGGGTTCACTGCTCATC ACCTTACCACTTCAATCTCCTTCCATGCCGCTCAATCCAATGCACCAAGGGGAATTCCAACGTCGGTCATATTTTTGATAAAACCGCAGCTTGCCATGTC GAAAACAGTAACGATGTCAGCGGGAGAAGATCTAATGGCCAGCTCCTGGATGACCCTATCGTCGTCCAATCGATCGACGGGTCAATGAGAACGGTTGACC ACTTCATATTCTCTTGCGGGTCAACATTGATGCTGAACAGCCTAACAAGCGGCACTCTTGGAATGATTTCATTAGGAGGAAGAAAGAGCCAGTCTCCCCG ACAGCGCAGTTCACGACAACATTCCGCTTCTTAA
AA sequence Show only first row Show all	>Lus10022958 pacid=23146140 polypeptide=Lus10022958 locus=Lus10022958.g ID=Lus10022958.BGIv1.0 annot-version=v1.0 MVLIASLPLIIVFTSHPHHHASSNLLLLPVAKDPATHQFTILIHHRPQLFMLVVNLGGPSLWVHCSSPYHFNLLPCRSIQCTKGNSNVGHIFDKTAACHV ENSNDVSGRRSNGQLLDDPIVVQSIDGSMRTVDHFIFSCGSTLMLNSLTSGTLGMISLGGRKSQSPRQRSSRQHSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03230			Eukaryotic aspartyl protease f...		Lus10022958 [exp]	0	1

Compare expression of checked genes

Lus10022958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.