Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04450 215 / 5e-63 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G62300 179 / 1e-49 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G22070 176 / 2e-48 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G01720 141 / 3e-36 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT5G15130 135 / 4e-34 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G68150 132 / 6e-34 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 133 / 2e-33 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT1G69810 113 / 3e-27 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 97 / 4e-22 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT1G80840 97 / 4e-22 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021554 [exp] 681 / 0 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10035286 [exp] 177 / 8e-49 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10015546 [exp] 156 / 1e-42 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10038028 [exp] 144 / 2e-37 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10023615 [exp] 132 / 8e-33 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10024246 [exp] 132 / 3e-32 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035971 [exp] 127 / 2e-31 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10016682 [exp] 124 / 2e-30 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10037205 [exp] 124 / 2e-30 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G155100 [exp] 256 / 1e-77 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.004G007500 [exp] 240 / 1e-71 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.002G228400 [exp] 179 / 6e-49 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.011G007800 [exp] 178 / 9e-49 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.014G111900 [exp] 171 / 8e-47 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 155 / 4e-41 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.001G208600 [exp] 132 / 7e-33 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.017G079500 [exp] 130 / 2e-32 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.015G064100 [exp] 131 / 4e-32 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.003G182200 [exp] 105 / 9e-25 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10022959 pacid=23146192 polypeptide=Lus10022959 locus=Lus10022959.g ID=Lus10022959.BGIv1.0 annot-version=v1.0 ATGGTTATAAGCGAGTTTGATTTTTTCTCCAACGATAATCTTCTTCTTCCCAAGAAACAAGACGATGATGTTTCCACTTTGGATGCTCTTTTAATGGCCC AAGAGGCCTTCAGCGTTGATATACATCCTTCGTGCCTTTTAAATACGGGGTTACATCTGGTGACGGGGAGCAGCGGGAGCGAAAAATCCAATGTGGCAGA TGATGGAGGAGTCTCCCAGAACACCGATGACCATAATCGTACGATAAATAAGTTGGCGGTATTGCAGGCAGAAATGGATCGAGTGATAGCAGAGAACCAA CAACTAAGAAGCAGCCTCAATCAAGTGAATTCTGACTACAATGCCTTACAGATTCAGCTCTTTGCTCTCATGCACCAGCAGCAGCCCCCGAAACAACACC TCAAGTCCTCCACCGATAATCAGGTTCAGATGAAGAGTATAGAATACAAAAATGGAGCATCAAGTACCGGAGCAATGGTGGCTAGACAGTTCATTGAGAT GGGGAAAGCACCTGAAAACAAAAGCATGAACAGTAGTAGGCTTGTTGGTCTGGAGGAGGACGCGTCTCAAACAACTTCCGAGGAAGAAAGGTCAGCCGAT TGCTCAATGGATTGCAAGTCCTCTTCCCCAAAGTCTACAGGGAATACCATGGTTTTGCGGCGAAGCAGCAGAGAAAATGGTGCAGTTCAAGACAGATATG ACTTGAGATCATCATCGTCCGCTGATCATCACCATAACAATAATAATACTAGTTACCGAAATAACGCTAGTACAACCGACCACAGCAACAACAACAACAG TAGTGGAAACAATATTATTCAGAAGCATGTACAACATCAGCAGCAACCAGGTGGATGGACGCCAAACAAGCTGCCCAAATTCGAAGCATGTGCGTCATCA TCAGCAGAAGCAGAGGAGCGCAAGGCTGAGAATACCCTTTCGATGATCAAGAAAGCCCGAGTTTCTGTTCGAGCCCGATCTGAAGCTGCCATGATGAATG ATGGGTGTCAATGGAGAAAGTACGGGCAGAAGATGGCAAAAGGGAACCCTTGCCCACGAGCTTACTATCGGTGCACAATGGCTTCTGGTTGCCCAGTTCG GAAGCAGGTGCAAAGGTGCGCGGAGGACCAGTCAATCCTAATCACAACCTACGAGGGACACCATAGCCACCCTCTCCCACCAGCAGCAATAACTATGGCA TCCACAACTTCCGCAGCAGCCTCAATGCTCCTCTCGGGTTCCATGCCTTCTGCTGACGGTCTCCCTAACACCAACCTCCTCGCCAGAAGTCTCCAGCTCT CCTCCCCACCCAGCATGGCTACCTTGTCTGCCTCTTCTCCTTTCCCCACAGTTACATTAGACCTCACTCACCCTTCCGCCACAATACAACACCACCATGC TTCAACCCAATTCCTCTCCTCTCCTAACTTCGCACCCCAACACCTCTTCGGACTGCACCCTGAAGCAAACGCCTCTTCTCAGTCCCCAGCTGACATTGCT AGTGCCGCCACAGCTGCTAGAACCGCCGATCCCAACTTCACGGCAGCGCTGGTGGCCGCAGTTACTTCTATCATTGGGAGTGGACATCGCACCAATAATG GGAATAGCAGTCCCAATGTCACAACTCACATTGAGAATACTTGA
AA sequence Show only first row Show all	>Lus10022959 pacid=23146192 polypeptide=Lus10022959 locus=Lus10022959.g ID=Lus10022959.BGIv1.0 annot-version=v1.0 MVISEFDFFSNDNLLLPKKQDDDVSTLDALLMAQEAFSVDIHPSCLLNTGLHLVTGSSGSEKSNVADDGGVSQNTDDHNRTINKLAVLQAEMDRVIAENQ QLRSSLNQVNSDYNALQIQLFALMHQQQPPKQHLKSSTDNQVQMKSIEYKNGASSTGAMVARQFIEMGKAPENKSMNSSRLVGLEEDASQTTSEEERSAD CSMDCKSSSPKSTGNTMVLRRSSRENGAVQDRYDLRSSSSADHHHNNNNTSYRNNASTTDHSNNNNSSGNNIIQKHVQHQQQPGGWTPNKLPKFEACASS SAEAEERKAENTLSMIKKARVSVRARSEAAMMNDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQVQRCAEDQSILITTYEGHHSHPLPPAAITMA STTSAAASMLLSGSMPSADGLPNTNLLARSLQLSSPPSMATLSASSPFPTVTLDLTHPSATIQHHHASTQFLSSPNFAPQHLFGLHPEANASSQSPADIA SAATAARTADPNFTAALVAAVTSIIGSGHRTNNGNSSPNVTTHIENT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Lus10022959 [exp]	0	1
AT1G29120			Hydrolase-like protein family ...		Lus10001893 [exp]	8.1	0.7411
					Lus10030338 [exp]	12.4	0.6695
AT5G23940		PEL3, DCR, EMB3...	PERMEABLE LEAVES3, EMBRYO DEFE...		Lus10039256 [exp]	12.6	0.7576
AT4G38840			SAUR-like auxin-responsive pro...		Lus10010713 [exp]	18.3	0.7050
AT2G27660			Cysteine/Histidine-rich C1 dom...		Lus10021061 [exp]	26.2	0.7091
AT3G54510			Early-responsive to dehydratio...		Lus10043455 [exp]	27.6	0.7031
AT4G21870			HSP20-like chaperones superfam...		Lus10007666 [exp]	31.0	0.6822
AT3G51760			Protein of unknown function (D...		Lus10022661 [exp]	32.3	0.6777
AT1G53035			unknown protein		Lus10039835 [exp]	33.2	0.6672
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Lus10008266 [exp]	33.3	0.6844

Compare expression of checked genes

Lus10022959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.