Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24070 293 / 9e-100 Peroxidase superfamily protein (.1) AT2G43480 285 / 1e-96 Peroxidase superfamily protein (.1) AT5G17820 171 / 5e-52 Peroxidase superfamily protein (.1) AT3G03670 166 / 3e-50 Peroxidase superfamily protein (.1) AT5G22410 156 / 2e-46 RHS18 root hair specific 18 (.1) AT5G15180 155 / 9e-46 Peroxidase superfamily protein (.1) AT5G51890 154 / 2e-45 Peroxidase superfamily protein (.1) AT2G41480 152 / 8e-45 Peroxidase superfamily protein (.1) AT3G01190 151 / 2e-44 Peroxidase superfamily protein (.1) AT3G32980 152 / 3e-44 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004804 [exp] 448 / 2e-160 AT5G24070 412 / 1e-144 Peroxidase superfamily protein (.1) Lus10025586 [exp] 328 / 2e-113 AT5G24070 418 / 6e-147 Peroxidase superfamily protein (.1) Lus10018375 [exp] 183 / 1e-56 AT5G17820 293 / 1e-98 Peroxidase superfamily protein (.1) Lus10043010 [exp] 179 / 7e-55 AT5G22410 300 / 9e-101 root hair specific 18 (.1) Lus10032511 [exp] 177 / 2e-54 AT5G22410 302 / 8e-102 root hair specific 18 (.1) Lus10004859 [exp] 174 / 2e-53 AT5G22410 309 / 1e-104 root hair specific 18 (.1) Lus10013631 [exp] 173 / 9e-53 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10001324 [exp] 171 / 5e-52 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10005679 [exp] 162 / 1e-48 AT4G26010 353 / 3e-122 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G132800 [exp] 338 / 3e-117 AT2G43480 446 / 2e-158 Peroxidase superfamily protein (.1) Potri.015G110200 [exp] 198 / 1e-62 AT5G22410 340 / 1e-116 root hair specific 18 (.1) Potri.013G066800 [exp] 171 / 1e-51 AT4G26010 360 / 1e-124 Peroxidase superfamily protein (.1) Potri.015G003500 [exp] 159 / 2e-47 AT1G05260 291 / 1e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.012G006800 [exp] 159 / 3e-47 AT1G05260 291 / 2e-97 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.017G038100 [exp] 156 / 3e-46 AT1G05260 479 / 7e-172 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Potri.018G089900 [exp] 150 / 5e-44 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.001G218450 [exp] 150 / 9e-44 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.001G218500 [exp] 150 / 9e-44 AT5G22410 280 / 1e-92 root hair specific 18 (.1) Potri.007G122200 [exp] 148 / 3e-43 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10022962 pacid=23146177 polypeptide=Lus10022962 locus=Lus10022962.g ID=Lus10022962.BGIv1.0 annot-version=v1.0 ATGGAGATAAGGTGCCCAGGCGTTGTCTCATGTGCAGACATCCTCAACCTTGCAACTAGAGATGCAGTTCACTTGGCAGGAGGTCCATCATATCCAGTCT TGACTGGTAGAAAGGACGGCTTGATATCAACCGCGTCAAACGTCGATCTCCCATCACCTTCTATCTCCGCCAATGCTGCATTAGCCTACTTCCAATCTAG GGGATTGGATGTTCTAGACATGGCCACTCTTTTAGGTGCCCATTCCATTGGTACGACCGACTGTCGCTACATCGTCGATCGGCTTTACAACTTCAAAAAC ACAAAGAAGGCAGACCCCAGCATGAACAAACAATTGGCTGACCAACTCAGGAAGAAATGCCCTCCTCTATCAAACACTTACACCACCAACTCCTCGAGGG TTTTTTTGAACCCAGATTCTGCAGATACCTACCAGCTCAGCAACTCCTACTATAAGAGGGCCTTGTCTTACCAATCCGTTCTAGGTGTCGACCAGCAGCT ACTCTACACTAATGACACCCTACAAATCACCCAAGAATTTTCCCGGGCTGACGGCTTTGAAAACTGGAGAAGATCTGTCGCCCTCTCCATGGCTAGAATG GGCAACATCAATGTCTTAACAGGGAATGCAGGGGAGATACGTAGGAATTGCAGATACACCAACAGTAAACTAAGTCATCTCATCTCAACATGA
AA sequence Show only first row Show all	>Lus10022962 pacid=23146177 polypeptide=Lus10022962 locus=Lus10022962.g ID=Lus10022962.BGIv1.0 annot-version=v1.0 MEIRCPGVVSCADILNLATRDAVHLAGGPSYPVLTGRKDGLISTASNVDLPSPSISANAALAYFQSRGLDVLDMATLLGAHSIGTTDCRYIVDRLYNFKN TKKADPSMNKQLADQLRKKCPPLSNTYTTNSSRVFLNPDSADTYQLSNSYYKRALSYQSVLGVDQQLLYTNDTLQITQEFSRADGFENWRRSVALSMARM GNINVLTGNAGEIRRNCRYTNSKLSHLIST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	0	1
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	2.8	0.9509
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Lus10038070 [exp]	7.1	0.9216
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	7.2	0.9394
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	8.4	0.9270
AT5G51980	C3HZnF		Transducin/WD40 repeat-like su...		Lus10038890 [exp]	9.2	0.8919
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	11.2	0.9388
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	13.9	0.9249
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	17.1	0.9328
AT5G16890			Exostosin family protein (.1)		Lus10039145 [exp]	18.2	0.8971
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	19.9	0.9367

Compare expression of checked genes

Lus10022962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.