Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24430 60 / 6e-10 NAC ANAC039, ANAC038 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) AT4G36160 54 / 1e-07 NAC ANAC076, VND2 VASCULAR-RELATED NAC-DOMAIN 2, NAC domain containing protein 76 (.1) AT5G62380 53 / 1e-07 NAC ANAC101, VND6 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) AT1G12260 53 / 2e-07 NAC ANAC007, VND4, EMB2749 VASCULAR RELATED NAC-DOMAIN PROTEIN 4, EMBRYO DEFECTIVE 2749, NAC 007 (.1) AT2G18060 52 / 3e-07 NAC ANAC037, VND1 Arabidopsis NAC domain containing protein 37, vascular related NAC-domain protein 1 (.1) AT1G32770 50 / 8e-07 NAC NST3, ANAC012, SND1 SECONDARY WALL-ASSOCIATED NAC DOMAIN 1, NAC SECONDARY WALL THICKENING PROMOTING 3, NAC domain containing protein 12 (.1) AT1G71930 50 / 9e-07 NAC VND7, ANAC030 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) AT5G46590 49 / 2e-06 NAC ANAC096 NAC domain containing protein 96 (.1) AT3G15170 49 / 2e-06 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G17730 49 / 2e-06 NAC ANAC057 NAC domain containing protein 57 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033279 [exp] 503 / 2e-179 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Lus10033281 [exp] 488 / 7e-174 AT1G71930 57 / 4e-09 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Lus10004531 [exp] 192 / 1e-57 AT2G24430 50 / 2e-06 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Lus10007204 [exp] 167 / 2e-48 ND 43 / 2e-04 Lus10008240 [exp] 166 / 8e-48 AT1G33060 50 / 1e-06 NAC 014 (.1.2) Lus10008200 [exp] 146 / 4e-42 ND 43 / 6e-05 Lus10001309 [exp] 121 / 8e-32 ND / Lus10008302 [exp] 90 / 2e-21 ND / Lus10034740 [exp] 90 / 3e-21 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G027900 [exp] 81 / 8e-17 AT2G24430 66 / 8e-12 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028300 [exp] 70 / 5e-13 AT3G10480 74 / 5e-14 NAC domain containing protein 50 (.1.2.3) Potri.015G002900 [exp] 68 / 2e-12 AT1G71930 71 / 2e-13 Arabidopsis NAC domain containing protein 30, vascular related NAC-domain protein 7 (.1) Potri.006G028700 [exp] 66 / 6e-12 AT2G24430 65 / 1e-11 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.006G028900 [exp] 66 / 6e-12 AT3G10480 71 / 8e-14 NAC domain containing protein 50 (.1.2.3) Potri.006G029200 [exp] 65 / 6e-12 AT3G10480 67 / 8e-13 NAC domain containing protein 50 (.1.2.3) Potri.014G163600 [exp] 64 / 3e-11 AT5G62380 58 / 3e-09 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.006G231300 [exp] 62 / 3e-10 AT5G62380 61 / 5e-10 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.017G058100 [exp] 58 / 4e-09 AT5G62380 49 / 4e-06 VASCULAR-RELATED NAC-DOMAIN 6, NAC-domain protein 101 (.1) Potri.005G255900 [exp] 57 / 8e-09 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10022965 pacid=23146165 polypeptide=Lus10022965 locus=Lus10022965.g ID=Lus10022965.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAACAAGTAGAACAACAGCCTCAACATCTCCAGATGCTTCCTCCGGGTTACCGTTTCAACCCATCTGAAGAGGAATTGGTAGGTTACCTTT TCAATCATATTTCCGGTTTCTCTTTACAAAATATTCCGTTTTGCCCCGTTGTTGTCTGCGACTTGTACAGCTCCGCAGAACCATGGGAGATTTGGCCAAG TTGTCAATCGGAAAGATTCGGCCTCCCTATCGGTGATGTCTACGTGATCACCAAGCTCAAAAAGTCCAAAACTTCTTCTACCAGACTGGATCGTTCCGTC GGAATCTCAGGGGGTACCTGGCATCAAACCAGTAAGGTTAAAAAAATCGAGGAGGTTGATTGCGGTGCACATAAACTATGTGGCCTTTGTAAGGGATTCA ATTACAAAAATCTCACATCTCCGGAAAATGGTTGCTGGCTTTTGACGGAGTACACCATCAGCATTGACGGTGGGAAGACCTACTCAGAGGAAGCCATATG CAAGCTTAACCATCACAAAACCAGCGAAGGGGCTGATCCTCAACCACCCTCCACTGGCAAGAGAAAGTTCGATGCTGCTGCTGGCTGTTCCTCACAGCCA TCTTCAAAGGTTCCTAGAATCTGTGATGGTGCCCCAACTCTGTCTCCCGACTTGATATCATTATCTGCCTCAAATGATGGAGTTGGTTATTCTTCTTCTT CTATGACCAATATTCACAATACGCTGCCAACAAATCAGTCTCACAACTCTGAGAATGAAGTTGGTTTCAATCTTGATGATGATATTTGGGCACTCCTTGA GGAAGAAATAGAACTTGGCAGTACTGGACAGCAAGTTCAGTCCCTTGTTGAACCAAATCAAGATCTCATATCATTTTCATCTGATTCATCCTTGAACTCT AAGGTACCTATAATTGATGACGATTTCATTAACCGTCTTTCTAGCCCTAGTTACATTCCCTGCTCATTTGATTCTGATTTGGGTTATGAAATTGATGTGC TTTGTTCACAAAACCTGCCTGGTAGTCCATTTTCTTATTTGCAAGATCTGCCCATATCTGATTTCCTCGTTTAG
AA sequence Show only first row Show all	>Lus10022965 pacid=23146165 polypeptide=Lus10022965 locus=Lus10022965.g ID=Lus10022965.BGIv1.0 annot-version=v1.0 MEEEQVEQQPQHLQMLPPGYRFNPSEEELVGYLFNHISGFSLQNIPFCPVVVCDLYSSAEPWEIWPSCQSERFGLPIGDVYVITKLKKSKTSSTRLDRSV GISGGTWHQTSKVKKIEEVDCGAHKLCGLCKGFNYKNLTSPENGCWLLTEYTISIDGGKTYSEEAICKLNHHKTSEGADPQPPSTGKRKFDAAAGCSSQP SSKVPRICDGAPTLSPDLISLSASNDGVGYSSSSMTNIHNTLPTNQSHNSENEVGFNLDDDIWALLEEEIELGSTGQQVQSLVEPNQDLISFSSDSSLNS KVPIIDDDFINRLSSPSYIPCSFDSDLGYEIDVLCSQNLPGSPFSYLQDLPISDFLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10022965 [exp]	0	1
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10041910 [exp]	2.0	0.9699
AT2G17930			Phosphatidylinositol 3- and 4-...		Lus10028458 [exp]	4.0	0.9550
AT1G70640			octicosapeptide/Phox/Bem1p (PB...		Lus10038115 [exp]	4.5	0.9608
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10022082 [exp]	5.5	0.9606
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	6.9	0.9616
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	8.3	0.9611
AT5G18140			Chaperone DnaJ-domain superfam...		Lus10005699 [exp]	9.8	0.9497
AT3G55160			unknown protein		Lus10007253 [exp]	9.9	0.9585
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	10.4	0.9602
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007174 [exp]	11.2	0.9545

Compare expression of checked genes

Lus10022965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.