Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24690 513 / 1e-178 Protein of unknown function (DUF3411) (.1) AT5G22790 93 / 5e-20 RER1 reticulata-related 1 (.1) AT2G37860 89 / 6e-19 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G56140 82 / 3e-16 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 80 / 2e-15 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT3G08630 51 / 1e-06 Protein of unknown function (DUF3411) (.1) AT5G12470 49 / 5e-06 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001610 [exp] 764 / 0 AT5G24690 572 / 0.0 Protein of unknown function (DUF3411) (.1) Lus10009845 [exp] 88 / 5e-18 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10040960 [exp] 87 / 1e-17 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10024346 [exp] 82 / 3e-17 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10010224 [exp] 81 / 9e-16 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10043364 [exp] 75 / 3e-14 AT5G22790 428 / 1e-148 reticulata-related 1 (.1) Lus10012657 [exp] 70 / 6e-13 AT2G37860 414 / 1e-144 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Lus10016379 [exp] 57 / 2e-08 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10019744 [exp] 57 / 2e-08 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019600 [exp] 557 / 0 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 548 / 0 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.016G103100 [exp] 97 / 3e-21 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.008G074300 [exp] 86 / 2e-17 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.009G150400 [exp] 84 / 2e-17 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.009G051800 [exp] 55 / 6e-08 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 53 / 2e-07 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.001G262200 [exp] 52 / 6e-07 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related
Representative CDS sequence Show only first row Show all	>Lus10022966 pacid=23146179 polypeptide=Lus10022966 locus=Lus10022966.g ID=Lus10022966.BGIv1.0 annot-version=v1.0 ATGTCTAACCTGGTGCTCAAAATCCCAGCAACCCAACTTCCCACCACCACTCCCAACCCTTCCGCCGCCGCGAGGTCCTCGCCATCGATACCGCATCCCC GGTTCATCATCGCGAGAAGACGGAGGCGTACGCCGACTCTGTCGATTTCGTGTAGCTGTTCCTCGCCGTCTCCGGCAATTGGCGGATGGAACGATGTTGC GCAGTTGGAGCGCTGTTTTATGGCTGCGCCCCTGATGAAGGGTTCGGGCCCGGTTATGAAGGGGAATCCCAAGTCCGGTGGTGCTGTCACTTTGGAGAAA GGGAAGGTCGAGAAGATTTCCAAGTCTAAAGCCCCCGAGGTTGAGACTGGCGGAGGTGGTGGAGATATTGGGAAAATTATAAATAATGGTGGTGGAGACG GAGGCGATGATGATGGTGATGATGATGACTACTTTGATGACTTTGACGAAGATGGCGAAGAGGGTGATGAAGGTGGGCTGTTCAGAAGGAGGAGAGTCTT TGAAGAGCTATTTGATAAAAAGTTTGTAGATGCTGTTTTGAATGAGTGGCAGAAAACCATGATGGATTTGCCTGCTGGTATCCGGCAAGCTTATGAAATG GGTTTGGTTAGCTCAACTCAAATGGTAAAAGTCCTTGCAATCAATGCCAGACCTACCACCGCAAGGTTCATTTCAAGAACGCTTCCTCAGTCAATCTCAA GGGCATTTATTGGAAGGATGCTGGCTGATCCTGCCTTCCTTCATAAGTTTTTCTTGGAGCAGCTCACAACACTTGGTTGCTCAGTCTGGTGGGAGGTGAA GAATCGTGGTGACAGGATAAAGCAGAAATGGGACCTGGCCCTTGTAAATGTATTGACAGTGACAGCATGCAATACCTTAGTTGTTTGGTCACTTGCTCCT TGTCGTTCATATGGAAATACATTCCAATCCGATCTACAGAACACACTACAGAAGCTACCAAATAATATATTTGAAAAGAGCTATCCATTCAGAGACTTTG ACTTGCAGAAGAGAATCCACTCATTCTTCTTCAAGGCAGCAGAATTATGCATGGTGGGTATAACTGCTGGAGCTGTACAAGGTTCATTGTCAAATCTTTT AGCCTCTAAGAAGAAGGATAGGGTGTCGGTGACAGTCCCATCGGTTGGTAACTACGCACTGGGTTATGGTGCTTTCCTTGGACTTTACGCGAATGTGAGA TACCAGTTACTATGTGGGTTTGATAGAGCGGTGGTCAACCACTTTGATGTCATTGGAGTGGCCCTGTTTCTGAGCACAGCTCTGAGGGTAATGAATGATC AGGCTGGGGAGGTGTCGAGGCTAGCATGGCTCGGGGTGGAGGTAGATCCTCTTGCTCAATCGGAAGACCTTCTTAAGAAAGCATACAACAGACCATCATC ATCAGAGGACGCCAATGCAGCAGAATCATCAAAATGGTTCATATCAAAGAAAGCACTTGTTTCAGGGTTGGGGCTTCTGGGCATCAAACAAGGAAATGCA GAATCGGGTAGCAGTGAGCCGGCGGCAAGTAAGCCTCGCAGGAAGAGAATTGTTCGGAAAAAGGTAGGTGCTGGTTCGGCATAG
AA sequence Show only first row Show all	>Lus10022966 pacid=23146179 polypeptide=Lus10022966 locus=Lus10022966.g ID=Lus10022966.BGIv1.0 annot-version=v1.0 MSNLVLKIPATQLPTTTPNPSAAARSSPSIPHPRFIIARRRRRTPTLSISCSCSSPSPAIGGWNDVAQLERCFMAAPLMKGSGPVMKGNPKSGGAVTLEK GKVEKISKSKAPEVETGGGGGDIGKIINNGGGDGGDDDGDDDDYFDDFDEDGEEGDEGGLFRRRRVFEELFDKKFVDAVLNEWQKTMMDLPAGIRQAYEM GLVSSTQMVKVLAINARPTTARFISRTLPQSISRAFIGRMLADPAFLHKFFLEQLTTLGCSVWWEVKNRGDRIKQKWDLALVNVLTVTACNTLVVWSLAP CRSYGNTFQSDLQNTLQKLPNNIFEKSYPFRDFDLQKRIHSFFFKAAELCMVGITAGAVQGSLSNLLASKKKDRVSVTVPSVGNYALGYGAFLGLYANVR YQLLCGFDRAVVNHFDVIGVALFLSTALRVMNDQAGEVSRLAWLGVEVDPLAQSEDLLKKAYNRPSSSEDANAAESSKWFISKKALVSGLGLLGIKQGNA ESGSSEPAASKPRRKRIVRKKVGAGSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24690			Protein of unknown function (D...		Lus10022966 [exp]	0	1
AT5G24690			Protein of unknown function (D...		Lus10001610 [exp]	1.7	0.7694
AT5G14970			unknown protein		Lus10014506 [exp]	3.5	0.7279
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	4.5	0.7000
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10025611 [exp]	7.9	0.7087
AT2G31890		ATRAP	RAP (.1)		Lus10006143 [exp]	8.5	0.6572
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10025111 [exp]	13.2	0.6760
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10001507 [exp]	21.0	0.5994
AT3G59980			Nucleic acid-binding, OB-fold-...		Lus10027077 [exp]	26.2	0.6308
AT4G29270			HAD superfamily, subfamily III...		Lus10043042 [exp]	41.0	0.6180
					Lus10008157 [exp]	42.7	0.6433

Compare expression of checked genes

Lus10022966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.