Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68180 154 / 2e-45 RING/U-box superfamily protein (.1) AT2G40830 115 / 7e-30 RHC1A RING-H2 finger C1A (.1.2.3) AT3G56580 107 / 4e-27 RING/U-box superfamily protein (.1.2.3) AT3G10815 103 / 1e-26 RING/U-box superfamily protein (.1) AT1G60360 102 / 6e-25 RING/U-box superfamily protein (.1) AT5G59550 100 / 4e-24 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G46620 100 / 8e-24 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G19950 94 / 5e-22 RING/U-box superfamily protein (.1) AT2G39720 94 / 1e-21 RHC2A RING-H2 finger C2A (.1) AT3G13430 90 / 2e-20 RING/U-box superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001611 [exp] 459 / 1e-164 AT1G68180 156 / 2e-46 RING/U-box superfamily protein (.1) Lus10003698 [exp] 117 / 5e-31 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10001582 [exp] 114 / 1e-30 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 115 / 8e-30 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 114 / 2e-29 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10028063 [exp] 108 / 3e-27 AT1G60360 224 / 9e-71 RING/U-box superfamily protein (.1) Lus10025612 [exp] 108 / 4e-27 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1) Lus10024372 [exp] 107 / 1e-26 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10010179 [exp] 105 / 2e-26 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127600 [exp] 209 / 1e-65 AT1G68180 158 / 1e-46 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 198 / 6e-62 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 114 / 3e-29 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.016G029300 [exp] 113 / 3e-29 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 112 / 6e-29 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.006G087800 [exp] 109 / 1e-27 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 109 / 2e-27 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 105 / 6e-26 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G036700 [exp] 102 / 6e-25 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1) Potri.003G223200 [exp] 102 / 1e-24 AT5G56340 301 / 3e-99 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10022967 pacid=23146151 polypeptide=Lus10022967 locus=Lus10022967.g ID=Lus10022967.BGIv1.0 annot-version=v1.0 ATGTCTTTGGCCGCCCCTCACCACCCTCGAGATTTCGTTAACGGCGTAAGGAGAATGAGAACTTTTCACTACTTTTGGTGTCATTATTGTCGACGAACTC TACGATTCGCTTCCATAAACCCACATAGAATGTTATGTCCCCATTGTTTCGTAACGTTAAGTCACGAACTTGACATATCACGTCCAATGTTAAGTAGCCA ACTCCCTGAACCAACAAGATTATTACTAGAATCGTTGTCCCTCATGGTGGATCCAAGAGTTCCTCCATATAATCACCCCTCGAGAAACGAAGATCAACAC TTCATCGATCATTGGATTACCCTTCATTTTCCTCCAACGGCACCTCATTTTCAAGACACCACCACACCAAACGAGGATCGACCAGGGCCACCGCCAGCCT CCTCGTCAGCAATCGAAGCATTACCGACCGTGAGAATCGGAGCAATGAATATAACCAAAGACCCCAACTGTCCAGTATGCAAAGAAGAGTTCAAGATGGG AGAAGAAGCGAGGGAGATGCCGTGCCACCACTTGTACCATTCTGACTGCATCGTGCCCTGGCTCACCATGCACAACACGTGTCCGGTTTGTCGGCACGCG CTTCAGATAGACAACCGTGGCGCCGAACTGCAGCATGATGGCCACACAAGCAATAATAACTATCGTAGTCGGGATGATGTGGGTAGTAATAACTATGATT TGGAGGAGTTAACGGTGAACGGAGTAAATTGGGTGAGGGATCAGGTATTTTCCATGGGGCGGCGACCCATTCGGATTGTTTCAGATTGGACGCTTCTGTG CATGGAAATGTTGGATCGGAGGATGGTTGGTTTAATTAATACCACCGATGGAGCAACAGGTGATTTGGGTCTTAAGTTTTAG
AA sequence Show only first row Show all	>Lus10022967 pacid=23146151 polypeptide=Lus10022967 locus=Lus10022967.g ID=Lus10022967.BGIv1.0 annot-version=v1.0 MSLAAPHHPRDFVNGVRRMRTFHYFWCHYCRRTLRFASINPHRMLCPHCFVTLSHELDISRPMLSSQLPEPTRLLLESLSLMVDPRVPPYNHPSRNEDQH FIDHWITLHFPPTAPHFQDTTTPNEDRPGPPPASSSAIEALPTVRIGAMNITKDPNCPVCKEEFKMGEEAREMPCHHLYHSDCIVPWLTMHNTCPVCRHA LQIDNRGAELQHDGHTSNNNYRSRDDVGSNNYDLEELTVNGVNWVRDQVFSMGRRPIRIVSDWTLLCMEMLDRRMVGLINTTDGATGDLGLKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60360			RING/U-box superfamily protein...		Lus10022967 [exp]	0	1
AT2G27140			HSP20-like chaperones superfam...		Lus10008426 [exp]	1.4	0.9602
AT5G24620			Pathogenesis-related thaumatin...		Lus10032914 [exp]	1.7	0.9677
AT5G24620			Pathogenesis-related thaumatin...		Lus10015591 [exp]	3.5	0.9592
AT5G67550			unknown protein		Lus10011544 [exp]	4.0	0.9575
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	6.5	0.9553
AT1G23530			unknown protein		Lus10030608 [exp]	7.7	0.9563
AT1G52570		PLDALPHA2	phospholipase D alpha 2 (.1)		Lus10041787 [exp]	7.9	0.9541
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10005072 [exp]	8.9	0.9450
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10043075 [exp]	9.0	0.9526
AT5G46530			AWPM-19-like family protein (....		Lus10004587 [exp]	9.5	0.9460

Compare expression of checked genes

Lus10022967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.