Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10790 202 / 2e-58 unknown protein AT3G56590 194 / 5e-54 hydroxyproline-rich glycoprotein family protein (.1.2) AT3G10810 169 / 9e-45 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001613 [exp] 719 / 0 AT3G56590 206 / 6e-62 hydroxyproline-rich glycoprotein family protein (.1.2) Lus10006254 [exp] 337 / 1e-111 ND / Lus10005851 [exp] 338 / 3e-111 ND / Lus10005309 [exp] 328 / 1e-107 ND / Lus10039943 [exp] 311 / 1e-99 ND / Lus10014865 [exp] 294 / 2e-94 ND / Lus10003428 [exp] 297 / 3e-94 ND / Lus10017044 [exp] 296 / 6e-94 ND / Lus10032803 [exp] 290 / 3e-92 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210600 [exp] 332 / 1e-104 AT1G10790 188 / 6e-55 unknown protein Potri.016G029100 [exp] 198 / 6e-55 AT3G56590 287 / 3e-91 hydroxyproline-rich glycoprotein family protein (.1.2) Potri.006G031800 [exp] 186 / 1e-50 AT3G56590 313 / 5e-101 hydroxyproline-rich glycoprotein family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022968 pacid=23146183 polypeptide=Lus10022968 locus=Lus10022968.g ID=Lus10022968.BGIv1.0 annot-version=v1.0 ATGGGTAATAAAGACGAGCACCAGCAGTTCGAGACCGGCGGCGGCAATGGAGCTACTGACAGTGGGAGGGCCACCTCTTCACTCTTCTGCTGCCACGGAT GTTCGATTTGGATGTACAGAGTCTCTCAGGAGTTCAGTTTCAAATGTGTTTTCGTTCTGATCCTTTCTTTCGCGCTTCTGCTCTCCGGGATCTTCTGGAT CTTCCCTTTCCACGCTCGCAATTTTAATGGATTTGATGCTAAGGAGGCAATTAAGCTTAGGGCCACTGCACAGGCGTACTTCAAACTTCCAAAGCCAGTT TCAGATGTGGTTCCACGTATGGAAGTATTAGAGAGCGACATTTTCAAAGAAATAAACTTCCCTGATATGAAGGTGGCTATGCTGTCGATACATCAAAATG GCACATCCAACTGGACGGATGGGGTTTTTGGCATACTTTCTAATCCGATGAATGCCCCAGTAAATCCAGCGCACGTAATTATGCTGAGGACTGCGTTAGT TGAGTTGTTCCTTAAGCAGATAAATCTCTCTGTAAACACCTCAGTATTCGGGGAGCCATATGATTTTGAAATTCTCAAGTTTCCTGGGGGGATCACTATA ATTCCGCTCCAGTATGGTTCCTTTTCGAAACCTCCCGAGCCCCTCTTCAATTTTACACTCAACAGCTCAATATCTGAGATCCTTCACAATTTTGGTGATT TGAGGGACCAGCTGAAGTCCGGATTGCGTCTCAGGCCCTACGAGAATATCTACTTGCAAATAACAAACGCAGCAGGCTCCACAATCCAGTCTCCAGTTAT TGTGCAAGCTACCGTCTCCTCAGCGTTTGGAAGCATTTTGCCACGAAGGTTAGAACAGTTGGCTCAAGCTCTCTGGGATTCAGATGGGAAGAATCTTGGC CTGCGTAACCCAGTCTTTGGTCAGGTGAAGGGTGTTAGTTTGTCATCCTACTTCAATTCGACAATTCATCCTACTCCTCCAAATCCCGCCCCTGCTCCAT CTCCGGCTCTCAGCTATGTTACTGAACCATCAGCTTCCCCATATCCAACCCACCATCCTGTTTCTCCATCTCCCTCACCTTCTCACTCTAGGCTCAAACA TTTAAAGGCTCCCAAAAGGGCACCCCGCCATTTCTTTCCTCCTGTAAATTCTCCTGCACCTTCTATTGGAACTGCTCATCCTCCTGACCCTTGTCCATAT TATCATCGTAAATTTCCTCGTCCTCCTAGCCACCAATCACCATCACCATCCCCATCACCTTCGGGTGTGAAGAATTTCTTCCATCCAGACGCTCCCCCAC CGCAGCTGCCTCCAAATCCCTCTCCTTTACCTGCAGCCTCCTATAGTTCAACATCCACAGAAGGGTCAGAACCTCCATCCATGGCTCCTGCACCATCTAC TCAATTCCCATCGTCCGTTGTCATCAAAACTGCACCAGAGAAATTACTGGAGAGGAAAGTACGAAGTAGCCAGTTTTGTGTTTGGGGGAGGATGGTAGAA GCTTGTACAAGAAAAGAAGAGTTGCAAGAGCGCGATGGGGTCGAGCTGAAATCATACCACCTCCACCACTTTTGGCGATCTTTGGAATACCGTCTTCCCG TAGACAGTGAGAAGTGGGAAGACCACGACTCTACAGATCGCGCGATCCTTAGCGGAAGTGTTCAGACCATTTGTGATAGAGGTGGCCCCGCTGTACGGGC CTTGACTTCACTGGTGCGGTCCCAGTATCAGCCAGAATCAGACGGAGTGAAGGAGCCGAAGAAGTCGGACGCACCTAAAGGGCGGCCCCGTGCACGAAAG ACCGATGGGCGGCACCCTTCGTACCACGAGCATGCGAGTGCCCATTGCACCCCATCTAAGGGCAAGACCAAATCAGGTAGCGGAACTGCGCAACCGGCTA AGCCAACCCCAAGCAAGTCTAAAACCTCAATTCCTAACACAGGGCTTCCATACATGTCGTATATCCCTCACGGGCTTTGGCCGTTGGCAACATCGGTATT CGACGTCATTGATGATGCCCACTGCGGGTTTAGATGTGTATCCCACTCTTTCACCGGCGGTGACCAACATCAATACGTTGCCATGCGGCAGGAGCTTATG GATCACGTCCATGTGTACTGGGGACGGTGGTATCATAAGGTGTATGAGGGCGAGTTGGATACTGTCCTTACGAGACTGGGGTGGCTGTGGAACACACCGT GTGAGAGACCTTGGTGGTTATGGAATCTGGACCTTTTCGGGTTCGCCACTAAGCACAATTGGACGTACGTGGTTTTTGGCATGGGGGGTCGTGGTATCCC GTACGAAGAGACTTTTCTCCCGATGAAAATCGGAGACACACCGGAGCCGGATGGTGTCACATTTCTGGTTTGCACCGGTGATCACTGGGTACGTTTATAT TTGGATGTCCATGACGGGGTACTTCCAATCCCGCTGGTTAGTTAA
AA sequence Show only first row Show all	>Lus10022968 pacid=23146183 polypeptide=Lus10022968 locus=Lus10022968.g ID=Lus10022968.BGIv1.0 annot-version=v1.0 MGNKDEHQQFETGGGNGATDSGRATSSLFCCHGCSIWMYRVSQEFSFKCVFVLILSFALLLSGIFWIFPFHARNFNGFDAKEAIKLRATAQAYFKLPKPV SDVVPRMEVLESDIFKEINFPDMKVAMLSIHQNGTSNWTDGVFGILSNPMNAPVNPAHVIMLRTALVELFLKQINLSVNTSVFGEPYDFEILKFPGGITI IPLQYGSFSKPPEPLFNFTLNSSISEILHNFGDLRDQLKSGLRLRPYENIYLQITNAAGSTIQSPVIVQATVSSAFGSILPRRLEQLAQALWDSDGKNLG LRNPVFGQVKGVSLSSYFNSTIHPTPPNPAPAPSPALSYVTEPSASPYPTHHPVSPSPSPSHSRLKHLKAPKRAPRHFFPPVNSPAPSIGTAHPPDPCPY YHRKFPRPPSHQSPSPSPSPSGVKNFFHPDAPPPQLPPNPSPLPAASYSSTSTEGSEPPSMAPAPSTQFPSSVVIKTAPEKLLERKVRSSQFCVWGRMVE ACTRKEELQERDGVELKSYHLHHFWRSLEYRLPVDSEKWEDHDSTDRAILSGSVQTICDRGGPAVRALTSLVRSQYQPESDGVKEPKKSDAPKGRPRARK TDGRHPSYHEHASAHCTPSKGKTKSGSGTAQPAKPTPSKSKTSIPNTGLPYMSYIPHGLWPLATSVFDVIDDAHCGFRCVSHSFTGGDQHQYVAMRQELM DHVHVYWGRWYHKVYEGELDTVLTRLGWLWNTPCERPWWLWNLDLFGFATKHNWTYVVFGMGGRGIPYEETFLPMKIGDTPEPDGVTFLVCTGDHWVRLY LDVHDGVLPIPLVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10790			unknown protein		Lus10022968 [exp]	0	1
AT3G56590			hydroxyproline-rich glycoprote...		Lus10001613 [exp]	1.0	0.9527
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	1.4	0.8921
AT5G58520			Protein kinase superfamily pro...		Lus10031864 [exp]	2.0	0.8834
AT2G42320			nucleolar protein gar2-related...		Lus10040502 [exp]	2.4	0.8771
AT4G22910		CCS52A1, FZR2	cell cycle switch protein 52 ...		Lus10001192 [exp]	5.7	0.8282
AT4G19900			alpha 1,4-glycosyltransferase ...		Lus10018315 [exp]	7.9	0.8868
AT4G35320			unknown protein		Lus10026561 [exp]	8.1	0.8831
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10037285 [exp]	8.4	0.8490
AT3G06330			RING/U-box superfamily protein...		Lus10012791 [exp]	8.5	0.8259
AT4G37820			unknown protein		Lus10019253 [exp]	8.5	0.8652

Compare expression of checked genes

Lus10022968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.