Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25290 309 / 3e-104 ATRBL10 RHOMBOID-like protein 10 (.1.2) AT5G38510 87 / 9e-19 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G63120 76 / 2e-15 ATRBL2 RHOMBOID-like 2 (.1) AT1G52580 76 / 2e-15 ATRBL5 RHOMBOID-like protein 5 (.1) AT5G07250 76 / 4e-15 ATRBL3 RHOMBOID-like protein 3 (.1.2) AT1G12750 72 / 5e-14 ATRBL6 RHOMBOID-like protein 6 (.1.2.3) AT1G77860 72 / 7e-14 KOM KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1) AT2G29050 71 / 2e-13 ATRBL1 RHOMBOID-like 1 (.1.2) AT3G53780 63 / 5e-11 ATRBL4 RHOMBOID-like protein 4 (.1.2) AT4G23070 59 / 2e-09 ATRBL7 RHOMBOID-like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001612 [exp] 546 / 0 AT1G25290 242 / 2e-78 RHOMBOID-like protein 10 (.1.2) Lus10023145 [exp] 103 / 1e-24 AT5G38510 339 / 7e-114 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10000628 [exp] 101 / 7e-24 AT5G38510 335 / 3e-112 Rhomboid-related intramembrane serine protease family protein (.1.2) Lus10027436 [exp] 83 / 2e-17 AT5G07250 392 / 1e-135 RHOMBOID-like protein 3 (.1.2) Lus10024497 [exp] 79 / 2e-16 AT1G63120 450 / 2e-160 RHOMBOID-like 2 (.1) Lus10017840 [exp] 78 / 4e-16 AT1G63120 441 / 9e-157 RHOMBOID-like 2 (.1) Lus10004965 [exp] 76 / 3e-15 AT2G29050 486 / 6e-173 RHOMBOID-like 1 (.1.2) Lus10005464 [exp] 75 / 8e-15 AT2G29050 453 / 1e-159 RHOMBOID-like 1 (.1.2) Lus10023789 [exp] 68 / 2e-12 AT2G29050 488 / 3e-173 RHOMBOID-like 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019500 [exp] 366 / 7e-127 AT1G25290 354 / 3e-122 RHOMBOID-like protein 10 (.1.2) Potri.017G112900 [exp] 96 / 1e-21 AT5G38510 364 / 3e-122 Rhomboid-related intramembrane serine protease family protein (.1.2) Potri.015G142000 [exp] 79 / 2e-16 AT5G07250 294 / 2e-98 RHOMBOID-like protein 3 (.1.2) Potri.009G031900 [exp] 76 / 3e-15 AT2G29050 434 / 7e-152 RHOMBOID-like 1 (.1.2) Potri.001G241300 [exp] 76 / 3e-15 AT2G29050 441 / 6e-155 RHOMBOID-like 1 (.1.2) Potri.003G122900 [exp] 74 / 8e-15 AT1G63120 374 / 3e-130 RHOMBOID-like 2 (.1) Potri.001G108700 [exp] 72 / 3e-14 AT1G63120 332 / 8e-114 RHOMBOID-like 2 (.1) Potri.012G139600 [exp] 72 / 7e-14 AT5G07250 324 / 6e-110 RHOMBOID-like protein 3 (.1.2) Potri.006G086300 [exp] 72 / 8e-14 AT2G29050 422 / 6e-147 RHOMBOID-like 1 (.1.2) Potri.002G090400 [exp] 61 / 3e-10 AT1G77860 298 / 1e-98 KOMPEITO, Rhomboid-related intramembrane serine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [flax] [poplar] Rhomboid-like PF01694 [flax] [poplar] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Lus10022969 pacid=23146175 polypeptide=Lus10022969 locus=Lus10022969.g ID=Lus10022969.BGIv1.0 annot-version=v1.0 ATGATGAACTCATCCTCGGCGGCTGCCGCTGGACTTCCACCTTGGTGGGTACCAATCCATATCCGGAAGGTGGATATTTCCCCCGCAGCTCTCAGCTTCA AAACGAATACCGCTTCTCTTCACTTGCACTACCTTCTCCGCTCCTTCTTCAAGAGATTTCCGCATCCCAATCACATTCCCAGGTTGAAGGATGTATGGTG TGAGAAAGCATCCCAAATTAAGGACATCAATTTGCTCCAAATTTCAAATGATTTATTTGCATCCACGAGTGCCTATTATCTCTGTCTTCTCCCTGGGGCG GAAACAAATAAGGACAGTTGGACCAAGAAGCAAAAACAATTAGAGACATCTAGAAGAAATTCACCAGGTGGAAGAAACTTGACAAATGTTCTTCTTGCTG CCAACATTCTAGTGTTTGCTGCTCAATATGCCACGGGAGGAGAGTTGATGTTCTGGGGAGCTAAGATCAACAGTCTCATTGACAGAGGACAGATTTGGAG ATTGGTGACTTCTTCATTTTTGCATTCTGGCGTTCTGCACCTCATGGTGAACTGCTATTCTTTGAATTCTATTGGCCCTACCATTGAGACTCTTACTGGA CCAAAGAGATTTCTAGCAGTCTATTTCACCTCTGCAATTGCAAGTTCAACGGCGAGTTATTGGTTATGCAAAGGACCTGCAGTTGGTGCCTCTGGTGCAG TCTTCGGATTAGTTGGATCTCTTGCTGTGTATGTGATGCGGCATAAAACCATGATACGAGGAGGAGGAAAACAGGAACTGCAGAACATAGCACAGATGAT ATTCCTAAATATGGTTATTGGTTTACTTAACCAGCAAATTGACAATTGGGGCCATGTAGGAGGGTTGCTTGGTGGAATTGCTATATCATGGTTAGTTGGA CCTGCCTGGAAATTGGACGAGTCGTTGTCACAAGATGGGCGCAAAGTTTTCATCGACAGTGCACCTCTCAAATTCCTTACCAGCATAGCAAGTAAAGGAA ATGGGGGACCCTAA
AA sequence Show only first row Show all	>Lus10022969 pacid=23146175 polypeptide=Lus10022969 locus=Lus10022969.g ID=Lus10022969.BGIv1.0 annot-version=v1.0 MMNSSSAAAAGLPPWWVPIHIRKVDISPAALSFKTNTASLHLHYLLRSFFKRFPHPNHIPRLKDVWCEKASQIKDINLLQISNDLFASTSAYYLCLLPGA ETNKDSWTKKQKQLETSRRNSPGGRNLTNVLLAANILVFAAQYATGGELMFWGAKINSLIDRGQIWRLVTSSFLHSGVLHLMVNCYSLNSIGPTIETLTG PKRFLAVYFTSAIASSTASYWLCKGPAVGASGAVFGLVGSLAVYVMRHKTMIRGGGKQELQNIAQMIFLNMVIGLLNQQIDNWGHVGGLLGGIAISWLVG PAWKLDESLSQDGRKVFIDSAPLKFLTSIASKGNGGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25290		ATRBL10	RHOMBOID-like protein 10 (.1.2...		Lus10022969 [exp]	0	1
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	3.2	0.8067
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	3.5	0.8232
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	10.2	0.7354
AT3G07180			GPI transamidase component PIG...		Lus10022779 [exp]	11.9	0.7691
AT5G63040			unknown protein		Lus10039957 [exp]	13.2	0.7567
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10029647 [exp]	13.7	0.6995
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10032608 [exp]	20.0	0.6869
AT4G28706			pfkB-like carbohydrate kinase ...		Lus10011270 [exp]	24.2	0.7551
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	30.3	0.7603
AT5G10070			RNase L inhibitor protein-rela...		Lus10002091 [exp]	32.3	0.7689

Compare expression of checked genes

Lus10022969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.