Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10780 533 / 0 F-box/RNI-like superfamily protein (.1) AT3G26922 50 / 2e-06 F-box/RNI-like superfamily protein (.1) AT1G55030 47 / 1e-05 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001614 [exp] 856 / 0 AT1G10780 533 / 0.0 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G019400 [exp] 600 / 0 AT1G10780 586 / 0.0 F-box/RNI-like superfamily protein (.1) Potri.001G210800 [exp] 571 / 0 AT1G10780 549 / 0.0 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022971 pacid=23146180 polypeptide=Lus10022971 locus=Lus10022971.g ID=Lus10022971.BGIv1.0 annot-version=v1.0 ATGGATTCTCTACCAGATGCAATCCTCCCATCAATATTCACAAACCTTTACAGTGCTAGAGAGATTGCTCTTTACAACTGTGTGTCAAAGAGATGGAAAG AATCGTTGCGATACCTCAGAACCCTCTATTTCCCACGCAGCGCTTTCGAAAAGCACACCGGTCATGACCATCCAGATACTATCGTGTTGAGGATGATAGC TGCTCTTGATCGGCTTGAAAAGCTTGTGGTATACAGCCCCTTTACAAGTAAAGGCCTAGCCTCGTGGCTGGTTATTGCTGGCTCGTCGCTGAAGCAGATC GAACTTAGAATGGATAACACGAGTATGCCCGAGTACCAGAGTTTTATAGACAACAGTCCCTCAAAGATGGATTGCCTTGCTTATGCTAGGAACGTCGAGT CCATGAAGCTTTGGGGGGTTCTCATGATAGACCCCCCCAAGTGGGACGCCTTTAAAAAGCTCCACACCCTCGAAATTGTTGGAGCTAGGCTGAAGGATTC TGCATTGACATCTGCACTCAAAGGATGCCCTAATTTGAAGACACTGGTACTTCTTGGCTGTGAAGGGAACCAGAAGGTTTCTATCGATTTGCCTCACCTG GAGAGATGCAAAATGGCCTTCCATGGCCAGGGGAACTGCTCGTTCTCGTTGAATTCCCCGAAAATTGAGGACCTTGAGGTGCATGGTTGTAGTTGGATTG GAGTTCCCCATACCAAATGCTTGAAGAATCTCACCATTTCCAACGAAGCGGGAAGAGTATATATGGTAGACTTTGGGGAACTCACTGCCCTTGAATCCTT AACTATAAGAGGAGTTCAGTGGTGTTGGGATGCCATCAGCACAATAATTAATTTGGCAAGTGAGGTCAAGCAACTGTTCATGAAGGTTGAATTCACTGGT GACATAGGTTCCTTAGATCCTTTCCCAGAGGTGGATTTTGTTGAGTTCTTCAACAGCCATCCCAAATTGCGCAAGTTTGATATTCACGGAGCCATGTTCG CTGCTCTTTGCCACAAGAACAGCCTCATCAATCTGGAGTCTGGCTTTGCAATTCCTTCACTGGAGGAAGTGGTGATACAAGTGAGGTCACCATTGAAAGC TGAACAAAAGATCAACATTCTGGAGTCGCTGATTAAGTATGGGAAGAATCTGAAGACAATGACGATTCGGATCCTTGAGATGAAGAGCAGCCACGGCAGT GCGGATGATTTCTTCGCCGATATTTGCAGGTTTCAGCATCTCAATCGCAAGATTGTTAGGATAGCATAG
AA sequence Show only first row Show all	>Lus10022971 pacid=23146180 polypeptide=Lus10022971 locus=Lus10022971.g ID=Lus10022971.BGIv1.0 annot-version=v1.0 MDSLPDAILPSIFTNLYSAREIALYNCVSKRWKESLRYLRTLYFPRSAFEKHTGHDHPDTIVLRMIAALDRLEKLVVYSPFTSKGLASWLVIAGSSLKQI ELRMDNTSMPEYQSFIDNSPSKMDCLAYARNVESMKLWGVLMIDPPKWDAFKKLHTLEIVGARLKDSALTSALKGCPNLKTLVLLGCEGNQKVSIDLPHL ERCKMAFHGQGNCSFSLNSPKIEDLEVHGCSWIGVPHTKCLKNLTISNEAGRVYMVDFGELTALESLTIRGVQWCWDAISTIINLASEVKQLFMKVEFTG DIGSLDPFPEVDFVEFFNSHPKLRKFDIHGAMFAALCHKNSLINLESGFAIPSLEEVVIQVRSPLKAEQKINILESLIKYGKNLKTMTIRILEMKSSHGS ADDFFADICRFQHLNRKIVRIA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10780			F-box/RNI-like superfamily pro...		Lus10022971 [exp]	0	1
AT4G15640			unknown protein		Lus10033970 [exp]	7.0	0.8899
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010986 [exp]	7.9	0.8798
AT1G10780			F-box/RNI-like superfamily pro...		Lus10001614 [exp]	17.7	0.8851
AT3G51800		ATEBP1, ATG2, E...	A. THALIANA ERBB-3 BINDING PRO...		Lus10005046 [exp]	19.4	0.8871
AT5G15200			Ribosomal protein S4 (.1.2)		Lus10012839 [exp]	19.9	0.8846
AT1G26880			Ribosomal protein L34e superfa...		Lus10030477 [exp]	21.6	0.8823
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10012380 [exp]	22.0	0.8866
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	23.7	0.8803
AT1G26880			Ribosomal protein L34e superfa...		Lus10012829 [exp]	25.7	0.8760
AT3G54490		RPB5E	"RNA polymerase II fifth large...		Lus10024169 [exp]	27.5	0.8496

Compare expression of checked genes

Lus10022971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.