Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09580 297 / 3e-103 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G57620 292 / 2e-101 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G21900 256 / 3e-87 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G10780 203 / 3e-66 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G26690 172 / 2e-54 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G14010 168 / 2e-52 emp24/gp25L/p24 family/GOLD family protein (.1) AT1G69460 162 / 2e-50 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03290 159 / 4e-49 emp24/gp25L/p24 family/GOLD family protein (.1) AT3G29070 150 / 1e-45 emp24/gp25L/p24 family/GOLD family protein (.1) AT2G03040 107 / 4e-29 emp24/gp25L/p24 family/GOLD family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001615 [exp] 392 / 9e-141 AT1G09580 294 / 4e-102 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10041939 [exp] 269 / 6e-92 AT1G21900 286 / 1e-98 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10005227 [exp] 158 / 2e-48 AT1G26690 231 / 4e-77 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030436 [exp] 154 / 1e-46 AT1G26690 263 / 2e-89 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10036786 [exp] 154 / 2e-46 AT1G26690 275 / 3e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10030693 [exp] 150 / 5e-46 AT1G26690 218 / 2e-72 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10037143 [exp] 146 / 1e-44 AT1G26690 249 / 2e-85 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10026625 [exp] 121 / 5e-34 AT1G26690 197 / 9e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Lus10039381 [exp] 68 / 7e-14 AT3G22845 350 / 1e-124 emp24/gp25L/p24 family/GOLD family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G210900 [exp] 296 / 8e-103 AT1G09580 268 / 7e-92 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.002G085300 [exp] 293 / 1e-101 AT1G09580 280 / 2e-96 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.003G019300 [exp] 286 / 5e-99 AT1G09580 275 / 1e-94 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.004G127200 [exp] 186 / 1e-59 AT1G26690 253 / 5e-86 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.008G090700 [exp] 175 / 3e-55 AT1G26690 308 / 1e-107 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.017G086900 [exp] 174 / 4e-55 AT1G26690 282 / 2e-97 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G164600 [exp] 172 / 5e-54 AT1G69460 272 / 3e-93 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.018G145544 [exp] 99 / 2e-26 AT1G26690 194 / 8e-64 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.010G081700 [exp] 66 / 3e-13 AT3G22845 366 / 1e-130 emp24/gp25L/p24 family/GOLD family protein (.1) Potri.001G369000 [exp] 48 / 9e-07 AT3G07680 315 / 2e-110 emp24/gp25L/p24 family/GOLD family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0521 [flax] [poplar] GOLD-like PF01105 [flax] [poplar] EMP24_GP25L emp24/gp25L/p24 family/GOLD
Representative CDS sequence Show only first row Show all	>Lus10022972 pacid=23146188 polypeptide=Lus10022972 locus=Lus10022972.g ID=Lus10022972.BGIv1.0 annot-version=v1.0 ATGATGACCACCATGAATGCTCCATGTTTCTTCTCCATCTTACTCTTGACGTCGTCATTTTGGATTACGACGGAGGCGATATGGTTGAATCTCCCTTCCT CCGGGACGAAATGCGTCTCCGAAGAACTCAGCAACAAGGTCGTCGTCCTCGCCGACTACGTTGTCGTCTCCGAAGATAATACTCAACATCCCACTATCTC CGTCAAGGTATCATCTCCATATGGCAATAATCTTCATCATACGGAGAATTCTATACAAGGTCAATTTGCATTCACGACTGAGGAGGCTGGCAATTATCTT GCATGCTTCTCGGTGGATGCCCATAGTCACGGAAAGGCTAATGTAAGTGTTAACCTTGATTGGAAGACTGGAATTGCAGCCAAGGATTGGGAAACCGTTG CCAAGAAAGAAAAGATTGAGGGTGTTCAAATGGAGCTGAAGAAACTCGAAGGAGCCGTGGAAGCTATCCATGAGAACTTGCTTTATCTCAAGAACAGGGA ATCAGAGATGAGGATTGTGAATGAGAAAACGAATAACAGAGTAGCGTGGTTCAGTATAATGTCTCTGGGTGTCTGCATCTTGGTATCTGTTCTGCAACTG TGGCATCTGAAGCGCTTCTTCCAGAAAAAGAAGCTCATCTAA
AA sequence Show only first row Show all	>Lus10022972 pacid=23146188 polypeptide=Lus10022972 locus=Lus10022972.g ID=Lus10022972.BGIv1.0 annot-version=v1.0 MMTTMNAPCFFSILLLTSSFWITTEAIWLNLPSSGTKCVSEELSNKVVVLADYVVVSEDNTQHPTISVKVSSPYGNNLHHTENSIQGQFAFTTEEAGNYL ACFSVDAHSHGKANVSVNLDWKTGIAAKDWETVAKKEKIEGVQMELKKLEGAVEAIHENLLYLKNRESEMRIVNEKTNNRVAWFSIMSLGVCILVSVLQL WHLKRFFQKKKLI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09580			emp24/gp25L/p24 family/GOLD fa...		Lus10022972 [exp]	0	1
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	7.7	0.8622
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Lus10010938 [exp]	15.9	0.8275
AT5G38700			unknown protein		Lus10002433 [exp]	17.1	0.8567
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10016847 [exp]	20.7	0.8444
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	27.1	0.8366
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10042648 [exp]	29.7	0.8276
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10023645 [exp]	35.0	0.8126
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	35.3	0.8227
AT2G12400			unknown protein		Lus10008028 [exp]	38.9	0.8237
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031368 [exp]	39.2	0.6994

Compare expression of checked genes

Lus10022972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.