Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45310 190 / 9e-58 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001616 [exp] 620 / 0 AT5G45310 185 / 5e-56 unknown protein Lus10022975 [exp] 143 / 2e-39 AT4G35380 176 / 4e-48 SEC7-like guanine nucleotide exchange family protein (.1) Lus10010582 [exp] 109 / 9e-30 ND 41 / 2e-05
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G234300 [exp] 244 / 7e-79 AT5G45310 229 / 1e-72 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022973 pacid=23146129 polypeptide=Lus10022973 locus=Lus10022973.g ID=Lus10022973.BGIv1.0 annot-version=v1.0 ATGGCGGATTTCACAGTACTTCTGTCAATGGTCACTAAGCGGCCGTTTTCACTTGGATTCTCACTGGTGGCGTTCGCTATCAAAGCCGGGTTCCTGGTGA TTAACACATGGGCGGAGCTGATAGCCGGATCGATCAATTTGCATCTGAGATTGTTTCGGAGTTGTATCATTTGGATGATCGCCCTTGTCTCGCTTCCGGT TCGGATTTCTACCGCCTTGCAGAAGGAGAGAATGCTGCAAGAGCGATTGGCCGTGGTGCAGGCTGAGCTAGCTGATGTTAATTGGGAAAGGAAGGTGCTT GAGGATCACTTGCGTTTGGCTGTTAAGGAATGTAACGATTTGGATTCGTTGTTGGGTGAAGCTGAAGATGAAGCTGATAAAATGGTTGCCAAAATCCAAC TGCTGGAACAACAGTTGAGTACTATGAGAGATGAAAATCATCAGCTAAAGCTCATCCAAGGCGAGCAGCAGCTACGAACGTCCGGACAGAACAGCCAGAG CTACGAAGGAAGTGCCGTGGGGGAGAATCAGACGAAACGCAAGTCCGATCAGTCATCGGTCATGAACAGGTCGTCAACGGATCATCGTCCGCTGATGGCC GGATCAGGACGCAAGATTCCTAGAAACAGGAACGGAGAAGTATTGGAACAGAGGGACCTTGCATTTTGGCAGAGTGTGTTAAGCGCGGTGCTGTCGCTGG CAGTTGGGATGATCATATGGGAGGCTAAGGATGCTGCAAATTGTATGCCCCTAGTTGTTGCTCTCTACACTGTCGTTGGAATGTCTCTGAAGAATGTGGT GAAGTTCTTTTCGACCATCGACAACAAGCCGGCTTCCGATGCAGTTGCTCTCTTGAGCTTCAACTGCTTCATCCTCGGAACACTCACTTACCCGACACTC CCTAGGGTAGTTCGGACTCTCGGATCGGTGGCTTCTGACTATTTCAGCCCCGGTATGGGCTCAAGCTAA
AA sequence Show only first row Show all	>Lus10022973 pacid=23146129 polypeptide=Lus10022973 locus=Lus10022973.g ID=Lus10022973.BGIv1.0 annot-version=v1.0 MADFTVLLSMVTKRPFSLGFSLVAFAIKAGFLVINTWAELIAGSINLHLRLFRSCIIWMIALVSLPVRISTALQKERMLQERLAVVQAELADVNWERKVL EDHLRLAVKECNDLDSLLGEAEDEADKMVAKIQLLEQQLSTMRDENHQLKLIQGEQQLRTSGQNSQSYEGSAVGENQTKRKSDQSSVMNRSSTDHRPLMA GSGRKIPRNRNGEVLEQRDLAFWQSVLSAVLSLAVGMIIWEAKDAANCMPLVVALYTVVGMSLKNVVKFFSTIDNKPASDAVALLSFNCFILGTLTYPTL PRVVRTLGSVASDYFSPGMGSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G45310			unknown protein		Lus10022973 [exp]	0	1
AT1G64030		ATSRP3	serpin 3 (.1)		Lus10019736 [exp]	9.9	0.6837
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	19.4	0.7075
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	23.7	0.6947
AT5G18910			Protein kinase superfamily pro...		Lus10012776 [exp]	26.2	0.6370
AT4G31500		SUR2, RNT1, RED...	SUPERROOT 2, RUNT 1, RED ELONG...		Lus10033173 [exp]	34.4	0.6395
AT3G07820			Pectin lyase-like superfamily ...		Lus10002931 [exp]	35.3	0.6033
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10010040 [exp]	60.7	0.6162
AT1G23540		IGI1, AtPERK12	proline-rich extensin-like rec...		Lus10013014 [exp]	67.2	0.6037
AT3G19300			Protein kinase superfamily pro...		Lus10034770 [exp]	69.6	0.6193
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10026535 [exp]	86.7	0.6440

Compare expression of checked genes

Lus10022973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.