Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03880 527 / 0 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 284 / 3e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 279 / 9e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 278 / 9e-87 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 261 / 1e-78 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 253 / 1e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G26782 254 / 2e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G02330 255 / 4e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G56570 249 / 5e-76 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 250 / 9e-76 MEF22 mitochondrial editing factor 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001617 [exp] 793 / 0 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 274 / 3e-84 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 271 / 6e-84 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040504 [exp] 270 / 2e-83 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015225 [exp] 271 / 4e-82 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038839 [exp] 265 / 9e-82 AT5G13230 715 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039117 [exp] 261 / 4e-80 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 263 / 1e-78 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 260 / 1e-78 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208000 [exp] 551 / 0 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G006800 [exp] 282 / 8e-88 AT2G33680 780 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 274 / 2e-84 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 277 / 5e-84 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 272 / 4e-83 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 265 / 2e-82 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 266 / 2e-81 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 260 / 4e-80 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G164900 [exp] 263 / 2e-79 AT5G13230 950 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 261 / 1e-78 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022974 pacid=23146182 polypeptide=Lus10022974 locus=Lus10022974.g ID=Lus10022974.BGIv1.0 annot-version=v1.0 ATGAAACGCATCGCCGCCACGCTAAAGCCACCGCCTTCACCGCCGACGAATCCTTCCTCCTCCTTCTCCTACACTTCTCTGATCTCGGAATTTACTCACT TATGCTATCAACAAGATATACCCAGAGCTATGAAAACTCTGGACGCCCTGGAAAGCCGAAGACTGTGGGGCGACCCGCTAGCCTACTCCCAACTCCTGAA ATCCTGCTTCTCCTCCCGCGCCCTACCTCAAGCCCTCCGCCTTCAATCACACCTCCTTTCTTCTCCACACTCTCCTCACACTTTCCTTCTCAACATCTTG CTCAACATCTACGTCAAACTACGTCACTTGCAACACGCCCGCAACCTGTTCGACCAAATGCCTCACAGAAATGTAGTCTCATGGACTACTATCATCTCTG CACACGCTAATGTCCCTGACCTTTCCCACTTGGCTCTCGAGTTTGTCGGTTCTATGCTTCGCCATGGCGTCCTCCCTAACATGTTCACCTTCTCTTCTGT CTTGAGAGCCTGTGCATCCGTGTCTCATCTCTCTCAGCTTCATTCCAGTATTTTCAAGCATGGGTTGGAATCCGATGTATTCGTCAGGAGTGCTCTTATT GATGCTTACTCCAAATGGGGTAGCTTGGGAAGTGCACTCAATGTGTTTAATGAGATGGTGACTGGCGATTTGGTGGTTTGGAATTCCATCATTGCTGCTT TTGCACACAACAGTGATGGCCATGAAGCGCTGCATCTTTTCAAGCGGATGAAGAGATACGGATTTATACCGGAGCAATCGTCGTTGACTAGCGTTCTGAC TGCCTGTACCAGTTTAGCGCTTCTGGAATTAGGGAGGCAGGTTCATGTTCATGTGTTCAAGTATGATCAGGACTTGATCCTGAATAACGCCCTCCTTGAT ATGTATTGCAAGTGTGGCTGCTTGGAAGATGCCAACACCATTTTCACTAGGATGGTTGATAAGGACGTCATCTCCTACAGCACCATGATTGCTGGGCTGG CGCAAAATGGTTATAGCAGACAGGCACTGGAGTTGTTCGAGTCCATGAAGGGTTCTTGCATAAAACCCAACTACATTACGCTTCTTGGTGTTCTGTTTGC ATGCAGCCATGCCGGGTTGGTGGAGGATGGCTGGCGCTATTTTCGATCCATGAAGAAGATTTACGGGATTGATCCTGGCAGGGAACACTATGCTTGTATG TTTGATCTTCTAGCGAGGGCGGGTAATCTCCAAGAAGCAGTTAAACTGATGGAGGAGATGGATTTTCAGCCAGATGTAGTGATGTGGAGAACTTTACTTG AATCCTGTCTAACATTTATGCAAACGCTCAAAGGTGGGAAGAGGTTGCGAAGATTAGGAAGGCAATGA
AA sequence Show only first row Show all	>Lus10022974 pacid=23146182 polypeptide=Lus10022974 locus=Lus10022974.g ID=Lus10022974.BGIv1.0 annot-version=v1.0 MKRIAATLKPPPSPPTNPSSSFSYTSLISEFTHLCYQQDIPRAMKTLDALESRRLWGDPLAYSQLLKSCFSSRALPQALRLQSHLLSSPHSPHTFLLNIL LNIYVKLRHLQHARNLFDQMPHRNVVSWTTIISAHANVPDLSHLALEFVGSMLRHGVLPNMFTFSSVLRACASVSHLSQLHSSIFKHGLESDVFVRSALI DAYSKWGSLGSALNVFNEMVTGDLVVWNSIIAAFAHNSDGHEALHLFKRMKRYGFIPEQSSLTSVLTACTSLALLELGRQVHVHVFKYDQDLILNNALLD MYCKCGCLEDANTIFTRMVDKDVISYSTMIAGLAQNGYSRQALELFESMKGSCIKPNYITLLGVLFACSHAGLVEDGWRYFRSMKKIYGIDPGREHYACM FDLLARAGNLQEAVKLMEEMDFQPDVVMWRTLLESCLTFMQTLKGGKRLRRLGRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03880		REME1	required for efficiency of mit...		Lus10022974 [exp]	0	1
AT2G33760			Pentatricopeptide repeat (PPR)...		Lus10025490 [exp]	1.0	0.8123
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005637 [exp]	6.3	0.8009
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10019891 [exp]	6.3	0.7354
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10036216 [exp]	9.8	0.7685
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014026 [exp]	20.4	0.6988
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10028011 [exp]	21.2	0.6560
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009681 [exp]	28.8	0.6133
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10035619 [exp]	30.6	0.7452
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Lus10019735 [exp]	30.8	0.7302
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	33.5	0.7041

Compare expression of checked genes

Lus10022974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.