Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35380 177 / 2e-48 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 171 / 3e-46 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 171 / 4e-46 SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 169 / 9e-46 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 119 / 8e-29 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT5G45310 100 / 2e-23 unknown protein AT1G13980 86 / 7e-18 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G19610 81 / 4e-16 GNL2 GNOM-like 2 (.1) AT2G03880 78 / 2e-15 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39500 77 / 7e-15 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022983 [exp] 211 / 6e-60 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 181 / 2e-49 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009300 [exp] 163 / 1e-43 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 162 / 4e-43 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022973 [exp] 144 / 2e-39 AT5G45310 189 / 1e-57 unknown protein Lus10001616 [exp] 141 / 2e-38 AT5G45310 185 / 5e-56 unknown protein Lus10009244 [exp] 122 / 2e-29 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10038084 [exp] 114 / 4e-27 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10009803 [exp] 114 / 5e-27 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208400 [exp] 201 / 1e-56 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 198 / 2e-55 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 175 / 1e-47 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 174 / 2e-47 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 121 / 2e-29 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.004G234300 [exp] 111 / 4e-27 AT5G45310 229 / 1e-72 unknown protein Potri.017G078900 [exp] 89 / 1e-18 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 86 / 1e-17 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.004G208000 [exp] 84 / 3e-17 AT2G03880 939 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G075300 [exp] 71 / 7e-13 AT5G19610 1796 / 0.0 GNOM-like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10022975 pacid=23146181 polypeptide=Lus10022975 locus=Lus10022975.g ID=Lus10022975.BGIv1.0 annot-version=v1.0 ATGGGAGGAGCTGGTTATGTCCCGGACACCAATTTTGTGCTCAAGGACCTGGAAGGAGAACAAAGGGAGGATTCCCTGAGGTATCACAGCGAAAAGCTGG CACTCATGTTTGGTCTAATGACTTTGCCCAAGGGACAGCGACGGGCTTATGAAGTGGAAATCCAGGTTTCCCTTAGTGACAAGCTTTACTTTGTTACATG CAGAAAGGTATCTCTCTATTTAATAGGAAACCCTCAAAGGGTATCTGAGTTTCTGATAAACACTATAAAAATAGGCGATTCTGCCGAAGAAGTTGCTGCA TTCCTTAAAAACACCAGTGGCTTGAATGAGATAGTGATTGGAGACTATCTGGGTGAAAGGGATGAATTATGTTTGAGAGTTATGCATGCATATGTGGACT CATTTAATTTCAAGGCAACAGGTTTTGTTGAATCTATAAGATATTTCTTAAGGGGCTTCAGGTTACCAGGCAAAACACAGAAGATTGACCGCAGCATGGA AAAGTTTGCTGAGCGCTATTGTAAATGCAATCTAAACTCATTTACCAGTGTAGATACAGCGTCAGTCTATCATGTCGTAACAGATGCTGCAATTTTGAGG TTTATGGCTAAGGTCTGCCGGGGTCCTATGTTGGCTGCATTCAGTATGACCCTTGATCAAAGTGATGATAAGCTTGCTACTTCTCAGTGCTTACAAGGAT TTACATACGCTGTGCATGTTACGGCAGTAATGGGAATGCAGACTCAGAGAGATGCTTTTGTCACATCAATTGCAAAGTTTACTTATCTTCACTGTGCTGC AGATATGAGAAAGAAGAATGTTGATGCTGTGAAGAATGTGTTGAGTGCGGTGCTGTCGCTGGCAGTTGGGATGATCATATGGGAGGCTAAGGATGCTGCT AATTGTATGCCCCTAGTTGTTGCTCTCTACACTGTCGTTGGAATGTCTCTGAAGAATGTGGTGAAGTTCTTTTCGACCATCGACAACAAGCCGGCTTCCG ATGCATTAGCTCTATTGAGCTTCAACTGCTTCATCATCGGAACACTTACTCTGACACTCCTCAGGCCTCAGGGTGGTTCGGACTTGTGGCTTCCGCGTAT TTCACCCCCAGAATGGGCTAGCCAAGGCGTGCCCGTTGTCTCCGATCGACTTGGCATTGTAAACAAAGATACACGTGTCACTTACTTTGAAGTTAACTAT GGATTGGTTTGGAGGAGGTATATGTTAGCGCGTGTATTAGACTTGTAA
AA sequence Show only first row Show all	>Lus10022975 pacid=23146181 polypeptide=Lus10022975 locus=Lus10022975.g ID=Lus10022975.BGIv1.0 annot-version=v1.0 MGGAGYVPDTNFVLKDLEGEQREDSLRYHSEKLALMFGLMTLPKGQRRAYEVEIQVSLSDKLYFVTCRKVSLYLIGNPQRVSEFLINTIKIGDSAEEVAA FLKNTSGLNEIVIGDYLGERDELCLRVMHAYVDSFNFKATGFVESIRYFLRGFRLPGKTQKIDRSMEKFAERYCKCNLNSFTSVDTASVYHVVTDAAILR FMAKVCRGPMLAAFSMTLDQSDDKLATSQCLQGFTYAVHVTAVMGMQTQRDAFVTSIAKFTYLHCAADMRKKNVDAVKNVLSAVLSLAVGMIIWEAKDAA NCMPLVVALYTVVGMSLKNVVKFFSTIDNKPASDALALLSFNCFIIGTLTLTLLRPQGGSDLWLPRISPPEWASQGVPVVSDRLGIVNKDTRVTYFEVNY GLVWRRYMLARVLDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35380			SEC7-like guanine nucleotide e...		Lus10022975 [exp]	0	1
AT2G44880			Pentatricopeptide repeat (PPR-...		Lus10003422 [exp]	1.0	0.8117
AT4G18425			Protein of unknown function (D...		Lus10015395 [exp]	2.8	0.7336
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10006628 [exp]	4.5	0.7462
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10042452 [exp]	5.0	0.7266
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10028837 [exp]	8.5	0.7138
AT5G62650			Tic22-like family protein (.1)		Lus10010502 [exp]	10.5	0.6904
AT1G17665			unknown protein		Lus10006153 [exp]	14.0	0.7020
AT4G34660			SH3 domain-containing protein ...		Lus10028785 [exp]	14.4	0.6609
AT3G46870			Pentatricopeptide repeat (PPR)...		Lus10040756 [exp]	16.7	0.7173
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005638 [exp]	17.1	0.6632

Compare expression of checked genes

Lus10022975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.