Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60870 77 / 1e-18 MEE9 maternal effect embryo arrest 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G003600 [exp] 106 / 3e-30 AT1G60870 100 / 1e-27 maternal effect embryo arrest 9 (.1) Potri.016G004300 [exp] 105 / 1e-29 AT1G60870 99 / 6e-27 maternal effect embryo arrest 9 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022977 pacid=23146142 polypeptide=Lus10022977 locus=Lus10022977.g ID=Lus10022977.BGIv1.0 annot-version=v1.0 ATGGAGAATCTCATCGCCCAATTTACCCTGCTTTCCGACGAAGCTCTGCGCAACAACAACTTCGATCCTTCCCAAATCGACGACGATCTGATGAAGCTCT TCGAAGTGGAAGCGTACAGGGCGTGGGCGGCGGTGGAGCTGGAGCAAGAGGAGGAAGCCATGGAGGCGGAGGAGGAGATGCAGCAGGCAGAGGAGGAGCT CGAGTCTGCCATGGAAGAGGCGATGGAAGAGTTCAGGAGGTTCGAAGAGGAGATGAATGGGATGGAGAAGGAGGAATTGGAGGAATTGGAACAGAGGGCG GAAAAGGCCAGGAGGATGGGGACGGTGATGGAGAAGGCCGCCACCGTGGCATCCAAAAAGTACATGGAGGCGGCGGGGAAGGCGGCCACCGCGTCAATGA GAGCTGCTTGGAAAGGGATTTCATCTCACAAAGTTCACCCTTCTTAA
AA sequence Show only first row Show all	>Lus10022977 pacid=23146142 polypeptide=Lus10022977 locus=Lus10022977.g ID=Lus10022977.BGIv1.0 annot-version=v1.0 MENLIAQFTLLSDEALRNNNFDPSQIDDDLMKLFEVEAYRAWAAVELEQEEEAMEAEEEMQQAEEELESAMEEAMEEFRRFEEEMNGMEKEELEELEQRA EKARRMGTVMEKAATVASKKYMEAAGKAATASMRAAWKGISSHKVHPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60870		MEE9	maternal effect embryo arrest ...		Lus10022977 [exp]	0	1
AT5G42000			ORMDL family protein (.1.2)		Lus10023031 [exp]	4.9	0.7718
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	5.2	0.7699
AT5G46720			AIG2-like (avirulence induced ...		Lus10034712 [exp]	6.8	0.8062
AT4G13540			unknown protein		Lus10023697 [exp]	8.1	0.7649
AT3G15360		ATHM4, ATM4, TR...	ARABIDOPSIS THIOREDOXIN M-TYPE...		Lus10014798 [exp]	15.2	0.7370
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	16.6	0.7672
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	20.8	0.7417
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	21.8	0.7372
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	24.9	0.7488
AT3G27100			unknown protein		Lus10012534 [exp]	25.2	0.7436

Compare expression of checked genes

Lus10022977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.