Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06960 511 / 3e-179 TGD4, PDE320 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2) AT2G44640 228 / 2e-69 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019499 [exp] 251 / 7e-78 AT2G44640 451 / 5e-156 unknown protein Lus10043347 [exp] 251 / 7e-78 AT2G44640 447 / 7e-155 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G002800 [exp] 578 / 0 AT3G06960 521 / 0.0 TRIGALACTOSYLDIACYLGLYCEROL 4, pigment defective 320 (.1.2) Potri.014G044200 [exp] 237 / 9e-73 AT2G44640 446 / 3e-154 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12600 [flax] [poplar] DUF3769 Protein of unknown function (DUF3769)
Representative CDS sequence Show only first row Show all	>Lus10022978 pacid=23146126 polypeptide=Lus10022978 locus=Lus10022978.g ID=Lus10022978.BGIv1.0 annot-version=v1.0 ATGGGAACAATGAACAAGCTAAGATGGGCAATGGACGGAGGTTTTTGGGACCTAGACATTTCCACTCCGGTGACCCTAGAAGGAGAGGCTAGGGCGGTAC CTGGACATCCTCTTCCTCTTGGGGTTTCTAGAGGGACGAGGCTCTCTAGGCCTAAGCAGATTGATTTCTTCCAGCGCTTCATGTTTGCTCCCTTTTTACC TTCCTATTCCTACTCTTCAGCATCCACTACTCACACTTTGTCACTCCAACGTGGTCTAACTATTCCCTTAACTCAGAACTGGTTTGCTGCATTGCAAGGA CGATTTAATCTTCATAAGTTTGTGTCCTCTCTAAAAAATTTCAGAGGGTTGCGTCAGCCTTCAGATTCCCAGTCCTCATCTCACCTCCCTGCTATTGGTG CATGCCTCCGTGACAAATCCTTGTATGCACTTGGCATCAGTACTGAGGTCTCGCTAACCCCTCAAGACACTCTTCTCCTCAGCTCTGATGCATATGGTGG TGATGACACAACACCTCGTCACAAGGCAGTCTTCCAACATGAGTTCCCTCATCACAATCTCACTTTGGAGGCAGTTTCCCCTGCCCTTTTCCTGGACAAG ACTGGAAACTATTGGGATGTACCTTTGTCCCTAGCCCTTGATCTTGCTTCCATTCCTTCCAAATCAGGTGCTAGTTATCACTTCTGTATGCGTCATATTG CTGGATTACCAAAGTTGTTTCAAGGTTGTGTCAACACCCATGGAGGAATTCCTGCTACCCTGCTTCCGGGTACCACTCTCAGACAAGCCATGTCCTTCAA GAAAAATGTAGAAATTTGGAGAAGCCAAGCTAAGAAGTTGAAGATGGTTCAACCATTTGACATCTTTCTTTCTAGTCCTCATGTTTCAGCATCAGGCGTC ATCGGTGCCGCTGTGACAGCCTCTCATGGAGAGACCTCACTTGGGTCAGACGTGAATGATTTGCAAAACACTGCAGGATTCTCCTATCAATCTCCTCGCC TCAAATCCGCGGTGCATGCTGACATGTTTTCATCCGTTTCATTCGTGGCTCAACACGGGAGCTTCCAGAAGTGGTTTCTAGATCTCACACGATTCCAAGC CCGTTTTGATTTTCCTTCTGGCCGCAAATTTCTTACAGGTGCCTCCCAGTTAGCACATGATTTTGTGAATTCTCAACAACCAACGATGAGGACGATGGAG GCAATTTGTCCAAATGCAACTATTTCCCTTCAACAGCAGATTGTAGGGCCTTTTAGCTTTAGAGTTGATTCTGAGGTAAATGTGAAGCTGAAGAACAAGA CGAATTGGGAGGTTCATGCACACGATACAGTGTTTGCTGTTGAGTATGCACTGCAAGTCCTTGGTTCAGCCAAGGCAATTGCTTGGTATGCGCCGAAGCA GCAGGAATTCATGGTAGAGCTTCGTTTTTTCGAGACATAA
AA sequence Show only first row Show all	>Lus10022978 pacid=23146126 polypeptide=Lus10022978 locus=Lus10022978.g ID=Lus10022978.BGIv1.0 annot-version=v1.0 MGTMNKLRWAMDGGFWDLDISTPVTLEGEARAVPGHPLPLGVSRGTRLSRPKQIDFFQRFMFAPFLPSYSYSSASTTHTLSLQRGLTIPLTQNWFAALQG RFNLHKFVSSLKNFRGLRQPSDSQSSSHLPAIGACLRDKSLYALGISTEVSLTPQDTLLLSSDAYGGDDTTPRHKAVFQHEFPHHNLTLEAVSPALFLDK TGNYWDVPLSLALDLASIPSKSGASYHFCMRHIAGLPKLFQGCVNTHGGIPATLLPGTTLRQAMSFKKNVEIWRSQAKKLKMVQPFDIFLSSPHVSASGV IGAAVTASHGETSLGSDVNDLQNTAGFSYQSPRLKSAVHADMFSSVSFVAQHGSFQKWFLDLTRFQARFDFPSGRKFLTGASQLAHDFVNSQQPTMRTME AICPNATISLQQQIVGPFSFRVDSEVNVKLKNKTNWEVHAHDTVFAVEYALQVLGSAKAIAWYAPKQQEFMVELRFFET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06960		TGD4, PDE320	TRIGALACTOSYLDIACYLGLYCEROL 4,...		Lus10022978 [exp]	0	1
AT2G39670			Radical SAM superfamily protei...		Lus10002698 [exp]	1.7	0.7804
AT3G13690			Protein kinase protein with ad...		Lus10006148 [exp]	5.3	0.7449
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	5.8	0.7668
AT3G45400			exostosin family protein (.1)		Lus10003870 [exp]	10.4	0.6981
AT5G06310		ATPOT1B, ATPOT1	protection of telomeres 1b, Nu...		Lus10031803 [exp]	10.6	0.6741
AT1G80770		PDE318	pigment defective 318, P-loop ...		Lus10043354 [exp]	17.1	0.7489
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	17.3	0.7191
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	21.2	0.6462
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10022422 [exp]	23.7	0.6217
AT3G22980			Ribosomal protein S5/Elongatio...		Lus10007838 [exp]	24.0	0.6620

Compare expression of checked genes

Lus10022978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.