Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38180 86 / 3e-20 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT4G38170 57 / 5e-10 FRS9 FAR1-related sequence 9 (.1) AT2G43280 42 / 3e-05 FAR1_related Far-red impaired responsive (FAR1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026732 [exp] 50 / 2e-08 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10025517 [exp] 45 / 2e-06 AT2G43280 87 / 1e-22 Far-red impaired responsive (FAR1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209000 [exp] 108 / 7e-28 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 108 / 9e-28 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.011G145800 [exp] 78 / 3e-17 AT4G38180 1003 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 68 / 9e-14 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.004G209100 [exp] 62 / 1e-11 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1) Potri.002G239300 [exp] 46 / 2e-06 AT2G43280 130 / 2e-37 Far-red impaired responsive (FAR1) family protein (.1) Potri.007G128800 [exp] 41 / 0.0001 AT3G07500 124 / 8e-35 Far-red impaired responsive (FAR1) family protein (.1) Potri.017G029400 [exp] 41 / 0.0001 AT2G43280 319 / 4e-112 Far-red impaired responsive (FAR1) family protein (.1) Potri.014G176600 [exp] 39 / 0.0004 AT4G12850 178 / 5e-57 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2), Far-red impaired responsive (FAR1) family protein (.3) Potri.007G128700 [exp] 39 / 0.0007 AT3G07500 138 / 2e-40 Far-red impaired responsive (FAR1) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022979 pacid=23146190 polypeptide=Lus10022979 locus=Lus10022979.g ID=Lus10022979.BGIv1.0 annot-version=v1.0 ATGGAAAATGAGGTGCTTGAATTCGATATAGGCTTAGGAAGTTTGAATGGTCGAAGCGACAGAGAAGATGACGCCATTGACATCGACCATTCCCTCGACG ACGACGAAGACCAAAGCTCTCCCGCCGCCGCCACCACAGTCGCTTCTGGTGCAGAGATCTACGTCCCGGACACTTCACTCAATGATGGAAAATCCACTTC GTTAAATCGTCAAAATAAGGGAGGATTGGCTGGTCTCAGTGGTAGAGAAAAGTGCAGCAGTGATAGTCGAGTACAGATATCCGGCCAACATTTGTCAGAG GATGATGTGGACAAGAGGATCCAACAACTGACGAACAAAGTGAAGTGCGCGAGTCGAAAGTGTGAAGCATATAGGGGTAAGTTGTTGTCAGTTTTGAAAG ACATAGAGGATCATAAACTACAGTTATCAATTAAAGTACAGAACATTAAAATCAGTATCAAAGATAGCTTGTAA
AA sequence Show only first row Show all	>Lus10022979 pacid=23146190 polypeptide=Lus10022979 locus=Lus10022979.g ID=Lus10022979.BGIv1.0 annot-version=v1.0 MENEVLEFDIGLGSLNGRSDREDDAIDIDHSLDDDEDQSSPAAATTVASGAEIYVPDTSLNDGKSTSLNRQNKGGLAGLSGREKCSSDSRVQISGQHLSE DDVDKRIQQLTNKVKCASRKCEAYRGKLLSVLKDIEDHKLQLSIKVQNIKISIKDSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Lus10022979 [exp]	0	1
AT2G30120			unknown protein		Lus10042267 [exp]	40.8	0.6121
AT2G02148			unknown protein		Lus10031926 [exp]	138.0	0.5670
AT3G54826			Zim17-type zinc finger protein...		Lus10037983 [exp]	225.0	0.5641

Compare expression of checked genes

Lus10022979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.