Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17410 377 / 9e-122 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2) AT1G76510 352 / 2e-116 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) AT1G20910 332 / 3e-109 ARID ARID/BRIGHT DNA-binding domain-containing protein (.1) AT1G76110 52 / 5e-07 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) AT1G04880 47 / 2e-05 ARID HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001618 [exp] 985 / 0 AT2G17410 395 / 4e-129 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Lus10013852 [exp] 479 / 3e-165 AT1G76510 265 / 1e-83 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10016045 [exp] 309 / 2e-99 AT1G76510 374 / 1e-126 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10026569 [exp] 221 / 2e-69 AT1G76510 164 / 1e-51 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Lus10007127 [exp] 50 / 3e-06 AT1G04880 376 / 3e-127 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10016671 [exp] 49 / 1e-05 AT1G04880 365 / 5e-123 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Lus10021228 [exp] 46 / 4e-05 AT1G76110 375 / 4e-130 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G208900 [exp] 497 / 1e-171 AT2G17410 416 / 6e-137 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.001G456500 [exp] 372 / 4e-123 AT2G17410 420 / 3e-139 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.011G145450 [exp] 360 / 3e-118 AT2G17410 423 / 3e-140 ARID/BRIGHT DNA-binding domain-containing protein (.1.2) Potri.002G003700 [exp] 355 / 1e-117 AT1G76510 451 / 5e-157 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.005G257300 [exp] 181 / 3e-52 AT1G76510 221 / 1e-68 ARID/BRIGHT DNA-binding domain-containing protein (.1.2.3) Potri.001G315200 [exp] 56 / 4e-08 AT1G04880 376 / 6e-128 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1) Potri.017G055200 [exp] 48 / 1e-05 AT1G04880 364 / 3e-122 HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01388 [flax] [poplar] ARID ARID/BRIGHT DNA binding domain CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10022981 pacid=23146162 polypeptide=Lus10022981 locus=Lus10022981.g ID=Lus10022981.BGIv1.0 annot-version=v1.0 ATGGCTGATCCGAAAGAAGCTCAAGATGTTGATGTTGATGCTGATGCTATGAAGATGGTTGCTGCTGGTGGAGAACTCAACGTCAGTCTAGATAATGCTG CTCCGGATGGTCAGCGTCCTCTTCCCCAACTTCCTTTTGAAAATAAGGTGGGAGATTCGTCCACATTGGATAATGCTTCTGTTGCTATGGACGTTGAAAC CCTAAATTCTACAAATGATTGTACTCAGCCTGCCCCTAGCGTCGAACTTGCTCCTGAGCTTCATGATTCTGCGCCTAATTCCTTGCAATGTTCGGATGCA ATGCCCAATGCTACTGGTCCTGAGTCCCTCTCTAGTAATATAGAGTCTGTTCACCACCCTGCTTGTGCAAAACCCACTGCCAATGGATCATTAGACGATG GAGGCCTAGTTTCTACTGTAAAGCAAGATACAGACAATGAAGATGCAAGTTTCAAATCCAAGCACTCTGATGATGGAAGCCCTGATGACAACCCTGATGA CAAGCTTGTTGTTCCAGAGGATAAGCAGCAACCTTCTATAGCTGAATATGAAGAGAACTCGATCTCTCCTTCTGCTGGTTACCAGACTACTGAGAGTAGA GATGATCACCGTGGAGAGAAAGTATCCCTGTTGAAAGATGCAATGGCCAGGGCTGATTTGTCTTTGCATTCGGAGGCTAAGAAGGGACTTCTAGAACCCA AGTTGGATGAAGAAACCGAAGAACCTATGAGAACCCCTGGTAAAACTTTCCTTTTGGAACCTTCTTCAGATGATGGCTACGATTCAGGAACAGAGGAGGA ACAAGCAGAGTTCATGAAGGAGGTTGAAACTTGTTATAAAGAAAATTACTTGGAATTCAAGCCCCCAAAGTTCTATAAAGAAGAACTCAATCTGCTTAAG TTATGGAGAGCTGTGATCAAACTAGGTGGATATGAACAGGTGACGTCATGCAAGTTATGGCGACAAGTTGGCGAATCATTTAGGCCTCCAAAGACCTGCA CAACCGTCTCCTGGACATTCAGAATTTTTTATGAGAAGGCATTGCTAGAATATGAGAAGCAGAAAATGCGCAACGGTGAGCTTCCTTTCTCTGATGGTCT ACCAACAGAGGCTACTAGGCCTGGAAACCAGTCTGGGGGAAGCCTATCTATTGTCTCAGGACGAGCGCCACGAAGAGATGCTGCTGCTCGTGCAATGCAG GGTTGGCATTCTCGCCTTCTTGGTAATGATGAGGTCAGTCCACCAGTCATTAAGGATAAGAACTTGAGCTCTATTCCCAAGGTTGACAAGCCATTGAAAA CAAATGGTCTACTAAAGCGGAAGAAGCCATCTAGTGCTGAGCGTTCCATCCATGTTTCTCCCTTGAAAACAATGAGGACACAAGCTGATGCAGTGGTAGT TGACGTAGGACCCCCAGCTGAATGGGTGAAGATCAATGTACAACGAACTAATGATTGCTTCGAGGTATATGCTCTAGTTCCAGGCCTTTTACGTGAGGAG GTTCATGTCCAGTCTGATCCAGCAGGGCGCTTGATTATATCTGGCCAGCCAGAGCAACTCGAGAATCCTTGGGGTGTTACCCCATTTAAAAAGGTGGTCA GCCTACCTTCCAGGATCGATGCACATCAGACATCCGCTGTGGTGACTCTGCACGGCCAGTTATTCGTTCGGGTCCCTTTTGAGCAATCTGACGTCTAG
AA sequence Show only first row Show all	>Lus10022981 pacid=23146162 polypeptide=Lus10022981 locus=Lus10022981.g ID=Lus10022981.BGIv1.0 annot-version=v1.0 MADPKEAQDVDVDADAMKMVAAGGELNVSLDNAAPDGQRPLPQLPFENKVGDSSTLDNASVAMDVETLNSTNDCTQPAPSVELAPELHDSAPNSLQCSDA MPNATGPESLSSNIESVHHPACAKPTANGSLDDGGLVSTVKQDTDNEDASFKSKHSDDGSPDDNPDDKLVVPEDKQQPSIAEYEENSISPSAGYQTTESR DDHRGEKVSLLKDAMARADLSLHSEAKKGLLEPKLDEETEEPMRTPGKTFLLEPSSDDGYDSGTEEEQAEFMKEVETCYKENYLEFKPPKFYKEELNLLK LWRAVIKLGGYEQVTSCKLWRQVGESFRPPKTCTTVSWTFRIFYEKALLEYEKQKMRNGELPFSDGLPTEATRPGNQSGGSLSIVSGRAPRRDAAARAMQ GWHSRLLGNDEVSPPVIKDKNLSSIPKVDKPLKTNGLLKRKKPSSAERSIHVSPLKTMRTQADAVVVDVGPPAEWVKINVQRTNDCFEVYALVPGLLREE VHVQSDPAGRLIISGQPEQLENPWGVTPFKKVVSLPSRIDAHQTSAVVTLHGQLFVRVPFEQSDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Lus10022981 [exp]	0	1
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Lus10022923 [exp]	1.7	0.8653
AT3G21290			dentin sialophosphoprotein-rel...		Lus10006871 [exp]	2.4	0.8539
AT4G21660			proline-rich spliceosome-assoc...		Lus10011207 [exp]	2.4	0.8561
AT3G21290			dentin sialophosphoprotein-rel...		Lus10037611 [exp]	3.5	0.8455
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Lus10033066 [exp]	5.5	0.8272
AT5G56730			Insulinase (Peptidase family M...		Lus10012918 [exp]	5.9	0.8464
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Lus10004055 [exp]	8.0	0.8438
AT5G10630			Translation elongation factor ...		Lus10020153 [exp]	9.0	0.8163
AT1G17210		ATILP1	ARABIDOPSIS IAP-LIKE PROTEIN, ...		Lus10038518 [exp]	10.0	0.8354
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10007449 [exp]	10.6	0.8528

Compare expression of checked genes

Lus10022981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.