Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38190 1768 / 0 ATCSLD4 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) AT3G03050 1586 / 0 RHD7, ATCSLD3, KJK, CSLD3 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) AT5G16910 1573 / 0 ATCSLD2 cellulose-synthase like D2 (.1) AT2G33100 1319 / 0 ATCSLD1 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) AT1G02730 1318 / 0 SOS6, ATCSLD5 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) AT1G32180 1170 / 0 ATCSLD6 CELLULOSE SYNTHASE LIKE D6, cellulose synthase-like D6 (.1) AT5G05170 795 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 787 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G09870 780 / 0 CESA5 cellulose synthase 5 (.1) AT2G25540 780 / 0 CESA10 cellulose synthase 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013851 [exp] 1910 / 0 AT4G38190 1876 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10026568 [exp] 1870 / 0 AT4G38190 1868 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Lus10009248 [exp] 1535 / 0 AT3G03050 1929 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10038008 [exp] 1422 / 0 AT3G03050 1818 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10010024 [exp] 1342 / 0 AT1G02730 1806 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Lus10030453 [exp] 1321 / 0 AT3G03050 1584 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10002134 [exp] 1310 / 0 AT3G03050 1473 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Lus10000755 [exp] 1238 / 0 AT2G33100 1590 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Lus10011736 [exp] 1177 / 0 AT2G33100 1508 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G170000 [exp] 1800 / 0 AT4G38190 1873 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.004G208800 [exp] 1781 / 0 AT4G38190 1835 / 0.0 ARABIDOPSIS THALIANA CELLULOSE SYNTHASE-LIKE D4, cellulose synthase like D4 (.1) Potri.019G049700 [exp] 1588 / 0 AT3G03050 2020 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.013G082200 [exp] 1581 / 0 AT3G03050 1987 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.001G136200 [exp] 1423 / 0 AT3G03050 1640 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.003G097100 [exp] 1422 / 0 AT3G03050 1610 / 0.0 ROOT HAIR DEFECTIVE 7, KOJAK, CELLULOSE SYNTHASE LIKE D3, cellulose synthase-like D3 (.1) Potri.014G125100 [exp] 1347 / 0 AT1G02730 1820 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.002G200300 [exp] 1328 / 0 AT1G02730 1813 / 0.0 SALT OVERLY SENSITIVE 6, CELLULOSE SYNTHASE LIKE D5, cellulose synthase-like D5 (.1) Potri.003G177800 [exp] 1316 / 0 AT2G33100 1569 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1) Potri.001G050200 [exp] 1286 / 0 AT2G33100 1576 / 0.0 CELLULOSE-SYNTHASE LIKE D1, cellulose synthase-like D1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03552 [flax] [poplar] Cellulose_synt Cellulose synthase
Representative CDS sequence Show only first row Show all	>Lus10022982 pacid=23146150 polypeptide=Lus10022982 locus=Lus10022982.g ID=Lus10022982.BGIv1.0 annot-version=v1.0 ATGGCATCTCAGCCATCCCAGCCATCAAACATAGCCATGCGTAATCCGGGCGGTCCAGGCGGCAATCAACAAGGAGGGAGTCGGAATGCAGGCGCTGCCG GAGGAGGAGGAGGCCAGGCCGTGAAATTCGCAAGGCGGACATCGAGCGGGAGGTACGTGAGCCTGTCAAGGGAGGACCTCGACATGTCCGGAGAGTTATC TGGAGACTACATGAACTACACGGTACACATTCCTCCCACGCCGGACAACCAGCCCATGGACGGGACGTCTGTGGCCGGGAAAGCTGAGGAGCAGTACGTG TCGAATTCTCTCTTCACGGGAGGTTTCAACAGTGTCACCCGGGCCCACCTCATGGACAAGGTGATCGATTCAGATGTGTCTCACCCTCAGATGGCAGGAT CCAGGGGCTCTTCCTGCGCCATGCCTTCATGTGATGGCAAAGTCATGAAGGATGCTCGTGGCAACGACATCATACCCTGTGAATGCAGGTTCAAGATATG CAGAGATTGTTACCTAGACGCTCAGAAGGCCGCCGGCTTATGTCCAGGATGCAAGGAGGCATATAGACATGGCGAATACGAAGAAGACATTCCCAATTTT GCCAACGGGGCACTCCCATTGCCTCCACCAAACAAGGGAGGCTCCAACCCCAACCAAAGAGGGGATTGGCTTTACGAGACCAAAGGCGATTACGGCTATG GGAACGCCTACTGGCCACCTTCAGACGACCTCTACGGGGACGAAGAAGACAACGATGACGAAACTTCCATGTTGGACAGAAATGACAAGCCATGGAAGCC CCTCAGCAAGACAACGCAGGTTGACGCATCTGTCCTTACCCCTTACCGAGGCTTCATCGCCATCCGATTTGTGGTCTTGGCCTTCTTCCTTCATTGGAGG CTCACCCATCCTAATAGAGACGCTGTCTGGTTATGGGCCATGTCTATTGTTTGCGAGCTTTGGTTCGCTTTCTCATGGATCCTTGATCAAATTCCCAAGC TGTCCCCTGTCAATAGGTCCACCGATCTCGAAGTCCTGAAGGAGAAGTTTGAAATGCCGTCCCCGGCTAATCCCACTGGACGGCCAGACCTCCCTGGCGT CGACATGTTTGTCTCGACAGCCGATCCTGAAAAGGAACCGCCTTTAATCACTGCCAACACCATATTATCCATTCTGGCAGCTGACTATCCTGTTGATAAG CTTGCTTGCTACATATCCGACGACGGAGGGGCATTATTGACATTTGAGGCGATGGCGGAGGCTGCAAGCTTTGCTGACCTGTGGGTGCCCTTCTGTCGTA AGCACAACATTGAGCCCAGGAATCCTGACAGCTACTTCAACTTGAAAGTGGACCCCACCAAGAACAAGAGCAGGCCCGACTTTGTCAAGGACAGGAGGAA GATGAAGAGGGAATTCGACGAGTTCAAGGTGAGAATCAACAGCCTCCCTGATTCGATTCGAAGGAGGTCGGACGCATTCAACGCTAGAGAAGAGATGAAG ATGCTAAAGCTGAAGAGGGAGAGCGGGGCGGACCCGTCTGAGCCTATAAAGATCCAGAGAGCCACGTGGATGGCAGATGGTACACATTGGCCGGGTACTT GGTCCACGTCAGCTCCTGACCATGCCAAGGGGGACCACTCAGGGATTCTGCAAGTGATGTTGAAGCCTCCTAGCTCTGATCCTTTAATGGGAGGCACTAA TGACGATAAGATTCTCGACTTCACTGGCATCGACATTCGACTGCCCATGTTTGTATACGTCTCTCGAGAGAAAAGACCTGGGTATGACCATAACAAGAAA GCTGGTGCAATGAACTGTTTGGTGAGAGCGTCTGCAATTCTCTCCAATGGCCCTTTCATTCTAAACCTTGATTGCGATCATTACCTTTACAACTGCAAAG CAATAAGAGAAGGGATGTGCTTCATGATGGACAGAGGAGGGGAGAATATCTGTTTCATTCAGTTTCCTCAAAGGTTTGAAGGGATCGACCCCTCTGATCG TTATGCAAATAAGAACACCGTCTTCTTCGATGGGAATATGCGTGCATTGGACGGTCTGCAAGGTCCTGTGTATGTGGGTACAGGAACTATGTTTCGGAGA TTTGCTCTATACGGGTTTAATCCTCCAAATCCTGACAAGACTCGCCCCAAAGACGAATCTTCATCTGCTGAGACACATCCCCTTACTACCACTGACTTCG ATCCTGACCTCGACCTTAATCTACTACCTAAAAGGTTTGGCAACTCTACAATGTTGGCAGAATCTATACCTGTTGCTGAGTACCAAGCTCGGCCATTAGC TGACCATCCTGATGTCAAGTACGGGCGCCCTCCTGGTGCTCTTAGGGTGCCCCGAGAACCACTTGATGCTACTACAGTAGCTGAAGCTGTCTCTGTAATC TCTTGCTGGTATGAGGACAAAACTGAATGGGGAGATCGAGTGGGGTGGATCTACGGCTCTGTTACAGAAGATGTGGTGACAGGTTATCGTATGCACAACC GTGGTTGGCACTCAGTTTACTGTGTCACCAAGCGTGATGCTTTCCGTGGAGGAGCTCCAATCAACTTGACAGATCGTCTCCACCAGGTGCTACGGTGGGC TACTGGCTCTGTTGAGATTTTCTTCTCCAGAAACAATGCATTCCTCGCATCCAAAAATCTCTTGTTTTTGCAGCGGCTCTTCTACCTCAATGTCGGAATC TACCCATTCACCTCCATCTTCCTCATTGTCTACTGCTTCCTACCGGCGCTCTCCCTTTTCTCGGGCTCCTTCATCGTGGAAAGCGTAACCATTACGTTCT TGGTCTACCTCCTCGTCATGACCTTCTGCCTCATTGGTCTAGCCATCTTGGAAGTCAAGTGGTCTGGCATCGCCTTAGAGGAGTGGTGGAGGAACGAACA GTTCTGGCTCATCTCGGGCACAAGTGCTCACTTGGCTGCCGTGGTACAGGGTCTCCTCAAGGTGATTGCAGGTATTGAGATCTCTTTTACACTGACATCC AAAGCAGCCGGTGACGACAACGAAGACCTCTATGCAGAGCTCCACCTCGTGAAGTGGACTTCACTCATGATCCCACCCATTGTCATTGCCATGACCAACA TCATAGCCATGGCATGGGCCTTCGTCAGGACGGTATACAGCACCACGCCTTCATGGAGTAAGCTGGTGGGAGGATGGTTCTTCAGCTTTTGGGTGTTGGC TCACTTGTACCCTTTTGCCAAAGGATTGATGGGGAGGAGAGGGAAGACTCCCACCATTGTGTATGTTTGGTCTGGTCTCATTACAATTACCATCTCACTT CTTTGGATTGCCATTAGCCCGCCAACAGCAGCCACCGAACCAGGCCAACCAGGCGGCACCGAAACAGGTTTCCAGTTGCTGTGA
AA sequence Show only first row Show all	>Lus10022982 pacid=23146150 polypeptide=Lus10022982 locus=Lus10022982.g ID=Lus10022982.BGIv1.0 annot-version=v1.0 MASQPSQPSNIAMRNPGGPGGNQQGGSRNAGAAGGGGGQAVKFARRTSSGRYVSLSREDLDMSGELSGDYMNYTVHIPPTPDNQPMDGTSVAGKAEEQYV SNSLFTGGFNSVTRAHLMDKVIDSDVSHPQMAGSRGSSCAMPSCDGKVMKDARGNDIIPCECRFKICRDCYLDAQKAAGLCPGCKEAYRHGEYEEDIPNF ANGALPLPPPNKGGSNPNQRGDWLYETKGDYGYGNAYWPPSDDLYGDEEDNDDETSMLDRNDKPWKPLSKTTQVDASVLTPYRGFIAIRFVVLAFFLHWR LTHPNRDAVWLWAMSIVCELWFAFSWILDQIPKLSPVNRSTDLEVLKEKFEMPSPANPTGRPDLPGVDMFVSTADPEKEPPLITANTILSILAADYPVDK LACYISDDGGALLTFEAMAEAASFADLWVPFCRKHNIEPRNPDSYFNLKVDPTKNKSRPDFVKDRRKMKREFDEFKVRINSLPDSIRRRSDAFNAREEMK MLKLKRESGADPSEPIKIQRATWMADGTHWPGTWSTSAPDHAKGDHSGILQVMLKPPSSDPLMGGTNDDKILDFTGIDIRLPMFVYVSREKRPGYDHNKK AGAMNCLVRASAILSNGPFILNLDCDHYLYNCKAIREGMCFMMDRGGENICFIQFPQRFEGIDPSDRYANKNTVFFDGNMRALDGLQGPVYVGTGTMFRR FALYGFNPPNPDKTRPKDESSSAETHPLTTTDFDPDLDLNLLPKRFGNSTMLAESIPVAEYQARPLADHPDVKYGRPPGALRVPREPLDATTVAEAVSVI SCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWHSVYCVTKRDAFRGGAPINLTDRLHQVLRWATGSVEIFFSRNNAFLASKNLLFLQRLFYLNVGI YPFTSIFLIVYCFLPALSLFSGSFIVESVTITFLVYLLVMTFCLIGLAILEVKWSGIALEEWWRNEQFWLISGTSAHLAAVVQGLLKVIAGIEISFTLTS KAAGDDNEDLYAELHLVKWTSLMIPPIVIAMTNIIAMAWAFVRTVYSTTPSWSKLVGGWFFSFWVLAHLYPFAKGLMGRRGKTPTIVYVWSGLITITISL LWIAISPPTAATEPGQPGGTETGFQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10022982 [exp]	0	1
					Lus10013687 [exp]	3.0	0.7687
AT5G16920			Fasciclin-like arabinogalactan...		Lus10013786 [exp]	5.7	0.7982
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	7.1	0.7666
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10037374 [exp]	7.4	0.7614
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030085 [exp]	8.1	0.7937
AT1G62340		ALE1	ABNORMAL LEAF-SHAPE 1, ABNORMA...		Lus10015559 [exp]	13.2	0.7789
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	14.2	0.7934
AT5G60740		ABCG28	ATP-binding cassette G28, ABC ...		Lus10016115 [exp]	17.5	0.7582
					Lus10014515 [exp]	24.8	0.7788
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	25.7	0.7584

Compare expression of checked genes

Lus10022982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.