Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38200 2229 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 2092 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT1G01960 1582 / 0 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 1470 / 0 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 776 / 0 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) AT1G13980 252 / 2e-67 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 247 / 6e-66 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT5G19610 210 / 2e-54 GNL2 GNOM-like 2 (.1) AT5G27970 69 / 3e-11 ARM repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001620 [exp] 3283 / 0 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009300 [exp] 1659 / 0 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 1191 / 0 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009244 [exp] 1078 / 0 AT3G60860 1579 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10009803 [exp] 754 / 0 AT3G43300 2569 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10038084 [exp] 693 / 0 AT3G43300 2350 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Lus10036789 [exp] 261 / 4e-70 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10026627 [exp] 259 / 1e-69 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 257 / 7e-69 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169800 [exp] 2528 / 0 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.004G208400 [exp] 2509 / 0 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 1679 / 0 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 1634 / 0 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 781 / 0 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2) Potri.017G078900 [exp] 253 / 1e-67 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 219 / 2e-57 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.018G075300 [exp] 218 / 5e-57 AT5G19610 1796 / 0.0 GNOM-like 2 (.1) Potri.013G035100 [exp] 58 / 8e-08 AT5G27970 2284 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09324 [flax] [poplar] DUF1981 Domain of unknown function (DUF1981) PF01369 [flax] [poplar] Sec7 Sec7 domain
Representative CDS sequence Show only first row Show all	>Lus10022983 pacid=23146113 polypeptide=Lus10022983 locus=Lus10022983.g ID=Lus10022983.BGIv1.0 annot-version=v1.0 ATGCGAAATGGCGGATCCAGTGTCGTGATCACGATATCATCATCCGCAGTAACATCGCCATCTGTACGTTTAGCATCCTCCGTCCACTATCGCACCGATT CTCCTCCGGTTGATATGAATTACCAAGTTCGACTAGTCTGTTCGCCTCCTGTCGCCCTTGGACGTTCTGCCCGCTGCGGCCGTGTCCTAGGCCCGTCGCT GGACAAGATCATTAAGAATGCAGCATGGCGGAAGCACTCCCACCTCGTCTCCTCCTGCAAATCCGCCCTCGACATGCTCCAATCTCTCTCCGACCTCCCT AATCACGACCCTGACTCCCCGCTCTTCTGCATCCCCGCTGCCGATTCACCTCTCCTTCTCCAGCCCATCCTCCTAGCCTTGGACTCCAACCACTCCAAGG TCGCCGAGCCAGCACTTGAATGCGCTTACAAGCTCTTCTCCCTCTCCCTCATACGCGGCGAGGCCGATCCTGCCTCCATTTCCCCTTCGCTCATTCTCAG GCTCCTCGACGCCGTTTGTCGGTCCTGCTCCATTGGAGACGAGGTTCTCGAGCTCTCTGTCCTTCGTGCACTCCTCGCCGCCGTCAGATCCCCTTGCCTT TCCATTAGCGGCGAGGGATTGGCCAGTATCATTAAGACCTGCTACAACGTTTACCTAGGCGGCACCAATGGCACCAATCAGATCTGTGCTAAGTCCGTTC TTGCTCAAATTGTCCTCATTGTTTTCACCAGAGTCGAGGAAGATTCAATGGATATTGTTCTTAGAACTATCTCCGTTGGCGAATTGCTCGAGTTCACTGA CAAGAATCTCAATGAAGGGAGTTCTATTCATTTTTGCCAGAACTTCATCAATGAGGTGATGTCTGCGGCTGCTGCTGAAGACATTCATCTCCCCGTACAT GTTCCTTCACCTGAGGTGAAGCAGGAAAATGGTGGTGCAACTGATGGATCTGCTGTTGGTGATAATGCGTCCAAAGTGGCGGATGACAAAGGTGAATCCG ATAATGGAGCTCAGTCTCAGCCTGTTGGTGCCGATACTGATGCTGCGGGTGCTGAAGCTACTGGGGATAGTAAAATTAGGGAGGATGGCTTTCTCCTTTT TAGGAATCTTTGCAAGTTATCTATGAAGTTTTCCTCCCAAGAGAATCCAGATGATCATATTCTGCTGAGAGGCAAGACGTTGTCACTGGAGTTGATCAAA GTTATAATGAACACTGGTGGTCCATTGCTGCGAAACAACGAAAGGTTTCTTACTGCTGTCAAGCAATACCTTTGCTTGTCATTGTTGAAGAACAGTGCAT TGTCAGTCATGGCTGTTTTCCAGCTTCAGTGCTCTATTTTTATAATATTGTTGTCAAAATTCAGATCTGGATTGAAAGAAGAAATTGGGATATTCTTCCC AATGCTCATTCTCCGAGTGCTTGAGAATGTTAACCAGCCTAGTTTCTTACAGAAAATGACCGTTCTAAATTTCCTGGAGAAGATTTTTTTGGATCCGCAA GCTATAATTGATCTTTTTGTCAACTATGACTGTGATGTGGAGTCTCCCAACTTATATGAAAGGACTGTCAACGGCCTTCTGAAAACTGCTCTAGGACCAC CACCTGGTTCAACCACAACATTATCTGCAGCTCAGGACATTACTTTTAGGCATGAATCTGTGAAGTGTTTGGTTATCATTATCAAGTCCATGGGTACATG GATGGACCAGCAGCTCAGAATAGAAGAAGCCTATTTGCCTAAAAGCACAGAGATTTATACTTCAATCGAGAATTATTCAAACCCTAGTGGAGAAGATGGT AGTATCCCGGACTATGATTTACATACAGAAGTTACCTCTGAATCTTCAGATGCTGTTACTCTAGAACAGCGACGGGCTTATAAAATGGAACTCCAGAAAG GTATCTCTCTATTTAATAGGAAACCATCAAAGGGTATCGAGTTTCTGATAAACAGTAAAAAAATTGGTGATTCTGCCGAAGAAGTTGCTGCATTCCTTAA AAACACCAGTGGCTTGAATGAGATAGTGATTGGAGACTATTTGGGTGAAAGGGATGAATTCTGTTTGAAGGTTATGCATGCATATGTAGACTCATTTAAT TTCAAGGCAATGGGTTTTGGTGAATCTATAAGATATTTCTTAAGGGGCTTCAGGTTACCTGGCGAAGCACAGAAGATTGACCGCATCATGGAAAAGTTTG CTGAGCGCTATTGTAAATGCAATCCGAACTCATTTACCAGTGCAGATACAGCGTACGTCCTTGCTTATTCCGTCATAATGCTTAATACAGATGCACATAA CAACATGGTGAAAGATAAGATGTCAAAAGCTGATTTCATACGAAACAATCGAGGAATAGATGACGGAAAAGATTTACCTGAAGAATACTTGAGCACCATC TACGATCAAATTGTTAAAAATGAAATTAAGATCAAGGCTGATTCTGTGCCTCAAGCTAAGCAGGAAAATAGTTTTAATAAGCTTTTAGGTTTAGATGGGA TACTCAATCTAGTAACATGGAAGCAGGCTGAAGAAAAGCCACTGGGTGCAAATGGGCTTCTAATTCGGCATATCCAAGAACAGTTCAGGGCAAAGTCAGG CAAAGCAGAGTCAGTTTATCATGTCGTAACAGATGTTGCAATTTTGAGGTTTATGGCTGAGGTCTGCTGGGGTCCTATGTTGGCTGCATTCAGTATGACC CTTGATCAAAGTGATGATAAGCTTGCTACTTCTCAGTGCTTGCAAGGATTTAGATACGCTGTGCATGTTACGGTAGTAATGGGAATGCAGACTCAGAGAG ATGCTTTTGTCACATCCATTGCAAAGTTTACTTATCTTCACTGTGCTGCAGATATGAGGCAGAAGAATGTTGATGCCGTGAAGGCAATTATAGCGATTGC TATTGAAGATGGTAATCACCTTCAAGAGTCTTGGGAGCATATTTTAACATGCCTTTCTCGGATTGAGCATCTGCAGCTGCTGGGGGAGGGTGCACCACCT GATGCATCTTTCTTGACTATTTCAAATACTGACCCAGATGAAAAAGCTTTAAAGTCCATGGGTAGTTACCCATCTCTAAAAAGAAAAGGAAGTCTGCAGA ATCCAGCTGTAATGGCTGTTGTCAGAGGCAGTTCATATGATAGTACTGGACTTGGATTGAACACTCTGGGACCTGTGACCCCAGAGCAGATTAATAGCTT CATTTCAAATTTGAATTTGCTTGATCAGATTGGGCACTTTGAGCTGAACCACGTATTTGCTAATAGCCAAATGCTGAACAGTGAGGCTATAGTGGCTTTT GTAAGAGCTTTATGCAAGGTCGCAATATCAGAGCTGCAGTCCCCAACTGATCCTCGTGTATTCAGCCTCACAAAGATTGTTGAAATAGCGCACTACAATA TGAACCGCATCAGACTAGTCTGGTCCCGTATATGGAATGTTCTATCAGATTTCTTCGTTTCTGTTGGCTTGTTTGAAAATCTCTCAGTTGCTATATTTGT GATGGATTCACTGCGGCAACTTGCTATGAAGTTCCTGGAACGGGAGGAGTTGGCAAATTACAACTTCCAGAACGAGTTTCTTAGACCTTTTGTGATTGTT ATGCAGAAAAGTGGATCCACAGAAATTAGAGAATTGATTGTTCGCTGTATCTCGCAGATGGTTCTTACTCGTGTGAATCATGTGAAATCTGGCTGGAAAA GTGTGTTTATGGTTTTTACAGCTGCCGCTGCTGACGAACGGAAAAATGTTGTCCTGTTGGCCTTTGAAACAATGGAGAAGATAGTGCGGGAATACTTTCC TTATATAACTGAAACAGAAACGACAACATTCACGGATTGTGTTAGATGCCTGACTACCTTCACAAATAGCAGGTTTAATAGTGATGTGAGCTTAAATGCC ATTGCATTTCTCCGTTACTGTGCTGTCAAACTTGCAGAAGGAGGCCTCAGTTGCAATGAGGTGAAAAAGGTTGATGATTCATCCAAGCCGGTGATGAACG AGGACACTTCAGATGAGCAAAATGTTTATGACAAGGATGATCATGCATCATTTTGGTTTCCTTTGCTCACAGGGTTGTCACGGTTGACCTCTGATCCTAG ATCAGCAATTAGAAAGAGTGCCTTGGAAGTTCTGTTCAACATTCTCAGTGATCATGGCCATCTCTTCTCACGTGTGGTTTGGATGGACATTTTCAAGTCC GTTGTCTTCCCCATTTTCAATGGATTATGTGATAAAAGAGATATTGATAGCAAAGGTGACCAAGATTCGGCAACTCCTGCACATCTTGAAGGAGGTTCAT GGGATTCTGATACATCTTCTTTAGCATCACAGTGTCTGGTCGATCTGTTTGTCCGCTACTTTGACGTGGTGCGGTCTCAACTGCATCATTTGATGACAAT TCTGACTGGGTTCATTAGAAGTCCTGTCCAAGGTCCTGCTAGTACCGGTGTTTCTGCATTGCTGCGGTTAGCAGGTGAACTGGGGAGTAGGCTGTCTGAT GATGAGTGGGCACAGATATTTGTAGCTCTGAAAGAAGCTGCTGCTTTAACAATGCCGGGTTTTATGAAAGTCTTCAGAAGCTTGGATGACATAGAGATGG CCATTGACCCCCAGTCTTATGCTGATATTGATGTGGCTTCTGATCCTGACTTTACTCAGGGTGACATTGAAGAGGACAGGCTCCAAACTGCAGCATATGT CGCTTCCAGAGTAAAGAGTCACATTGCTATCCAGCTACTCATCACACAGGTTGCCATTGACCTATACAGAACACACCTAAAGTACCTGTCTGAATCCAAT ATCAGTATCATCATCGAGATGTTCCGAACCGTTGCATCCCATGCCCACGATCTCAACTGCGAGACATTCCGATTGAAGAAACTTCAGAGAGCATGCTCTA TACTAGAGATCTCAGATCCTCCAATGGTACACTTTGAAAACGAATCTTACCAGAATTACCTGAGCTTGCTTCAGGACTTGATTGTTGATAAACCATGGGT GTGCAAAGATATGAATGTAGAGTCACGACTGGTGGAGGTATGTGTCGAGATTCTGCAGATATATCTCAAGTGCACAGAACGTCCTTCCTCCACGACCCTC AACCTGGTGGTGACCCGGTCGGTGCTCCCTTTAGGCGCTGCAAAGAAGGAAGAACTGGTGGCGAGGACTTCATTGCTCGTGTCGGCACTACAAGGGTTAA GCGGACTGGATCGGGAGACTTTTGGGAAACACGTAATGGAGTTCTTTCAGCTGTTGGTAGATCTGGTGAAGAGTGAGCATAGTTCAGGAGAAGTTCAGAG GGCGTTGAGTAACATTTTCACGTCATGTATAGGGCCGATAGTAATGTAG
AA sequence Show only first row Show all	>Lus10022983 pacid=23146113 polypeptide=Lus10022983 locus=Lus10022983.g ID=Lus10022983.BGIv1.0 annot-version=v1.0 MRNGGSSVVITISSSAVTSPSVRLASSVHYRTDSPPVDMNYQVRLVCSPPVALGRSARCGRVLGPSLDKIIKNAAWRKHSHLVSSCKSALDMLQSLSDLP NHDPDSPLFCIPAADSPLLLQPILLALDSNHSKVAEPALECAYKLFSLSLIRGEADPASISPSLILRLLDAVCRSCSIGDEVLELSVLRALLAAVRSPCL SISGEGLASIIKTCYNVYLGGTNGTNQICAKSVLAQIVLIVFTRVEEDSMDIVLRTISVGELLEFTDKNLNEGSSIHFCQNFINEVMSAAAAEDIHLPVH VPSPEVKQENGGATDGSAVGDNASKVADDKGESDNGAQSQPVGADTDAAGAEATGDSKIREDGFLLFRNLCKLSMKFSSQENPDDHILLRGKTLSLELIK VIMNTGGPLLRNNERFLTAVKQYLCLSLLKNSALSVMAVFQLQCSIFIILLSKFRSGLKEEIGIFFPMLILRVLENVNQPSFLQKMTVLNFLEKIFLDPQ AIIDLFVNYDCDVESPNLYERTVNGLLKTALGPPPGSTTTLSAAQDITFRHESVKCLVIIIKSMGTWMDQQLRIEEAYLPKSTEIYTSIENYSNPSGEDG SIPDYDLHTEVTSESSDAVTLEQRRAYKMELQKGISLFNRKPSKGIEFLINSKKIGDSAEEVAAFLKNTSGLNEIVIGDYLGERDEFCLKVMHAYVDSFN FKAMGFGESIRYFLRGFRLPGEAQKIDRIMEKFAERYCKCNPNSFTSADTAYVLAYSVIMLNTDAHNNMVKDKMSKADFIRNNRGIDDGKDLPEEYLSTI YDQIVKNEIKIKADSVPQAKQENSFNKLLGLDGILNLVTWKQAEEKPLGANGLLIRHIQEQFRAKSGKAESVYHVVTDVAILRFMAEVCWGPMLAAFSMT LDQSDDKLATSQCLQGFRYAVHVTVVMGMQTQRDAFVTSIAKFTYLHCAADMRQKNVDAVKAIIAIAIEDGNHLQESWEHILTCLSRIEHLQLLGEGAPP DASFLTISNTDPDEKALKSMGSYPSLKRKGSLQNPAVMAVVRGSSYDSTGLGLNTLGPVTPEQINSFISNLNLLDQIGHFELNHVFANSQMLNSEAIVAF VRALCKVAISELQSPTDPRVFSLTKIVEIAHYNMNRIRLVWSRIWNVLSDFFVSVGLFENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIV MQKSGSTEIRELIVRCISQMVLTRVNHVKSGWKSVFMVFTAAAADERKNVVLLAFETMEKIVREYFPYITETETTTFTDCVRCLTTFTNSRFNSDVSLNA IAFLRYCAVKLAEGGLSCNEVKKVDDSSKPVMNEDTSDEQNVYDKDDHASFWFPLLTGLSRLTSDPRSAIRKSALEVLFNILSDHGHLFSRVVWMDIFKS VVFPIFNGLCDKRDIDSKGDQDSATPAHLEGGSWDSDTSSLASQCLVDLFVRYFDVVRSQLHHLMTILTGFIRSPVQGPASTGVSALLRLAGELGSRLSD DEWAQIFVALKEAAALTMPGFMKVFRSLDDIEMAIDPQSYADIDVASDPDFTQGDIEEDRLQTAAYVASRVKSHIAIQLLITQVAIDLYRTHLKYLSESN ISIIIEMFRTVASHAHDLNCETFRLKKLQRACSILEISDPPMVHFENESYQNYLSLLQDLIVDKPWVCKDMNVESRLVEVCVEILQIYLKCTERPSSTTL NLVVTRSVLPLGAAKKEELVARTSLLVSALQGLSGLDRETFGKHVMEFFQLLVDLVKSEHSSGEVQRALSNIFTSCIGPIVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38200			SEC7-like guanine nucleotide e...		Lus10022983 [exp]	0	1
AT4G38200			SEC7-like guanine nucleotide e...		Lus10001620 [exp]	1.0	0.9701
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10038410 [exp]	1.4	0.9691
AT4G31570			unknown protein		Lus10020133 [exp]	3.9	0.9582
AT5G47490			RGPR-related (.1)		Lus10007471 [exp]	4.5	0.9515
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10024056 [exp]	5.1	0.9398
AT5G47490			RGPR-related (.1)		Lus10028946 [exp]	5.2	0.9491
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	5.3	0.9503
AT3G60920			unknown protein		Lus10009306 [exp]	7.5	0.9545
AT4G38200			SEC7-like guanine nucleotide e...		Lus10015863 [exp]	8.5	0.9506
AT3G08530			Clathrin, heavy chain (.1)		Lus10030393 [exp]	8.5	0.9496

Compare expression of checked genes

Lus10022983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.